View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_14 (Length: 544)
Name: NF0908_low_14
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 90 - 346
Target Start/End: Complemental strand, 27083809 - 27083553
Alignment:
| Q |
90 |
tcatcaacactaagaaatcgaacacagaaaagagattaagagatgaacggatttcatttgaagctcatacgattcatgcaatctaaatactaaaacaatt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27083809 |
tcatcaacactaagaaatcgaacacagaaaagagattaagagatgaacggatttcatttgaagctcatacgattcatgcaatctaaatactaaaacaatt |
27083710 |
T |
|
| Q |
190 |
caacttcgaacaaatcaaaaattaaagtcaacaaaacgttcatatcactgcaattttcaaccgtaacagtttagagacaaatttcatcaacacgagaact |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27083709 |
caacttcgaacaaatcaaaaattaaagtcaacaaaacgttcatatcactgcaattttcaaccgtaacagtttagagacaaatttcatcaacacgagaact |
27083610 |
T |
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| Q |
290 |
tcatcaactgttgccgtcatttcaacttcaacaccattcaacacaatcagaatgcgg |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27083609 |
tcatcaactgttgccgtcatttcaacttcaacaccattcaacacaatcagaatgcgg |
27083553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 428 - 544
Target Start/End: Complemental strand, 27083471 - 27083355
Alignment:
| Q |
428 |
aaccgttaaataactatcaatttagctataaacttcatcaaacctatgaaccaaacacagaaaagagattaacaatttcatttgaagctcatatgattca |
527 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27083471 |
aaccgttaaataactatcaatttagttataaacttcatcaaacctatgaaccaaacacagaaaagagattaacaatttcatttgaagctcatacgattca |
27083372 |
T |
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| Q |
528 |
tgcaatctaaatactaa |
544 |
Q |
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| T |
27083371 |
tgcaatctaaatactaa |
27083355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 27083397 - 27083285
Alignment:
| Q |
140 |
atttcatttgaagctcatacgattcatgcaatctaaatactaaaacaattcaacttcgaacaaatcaaaaattaaagtcaacaaaacgttcatatcactg |
239 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||| |
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| T |
27083397 |
atttcatttgaagctcatacgattcatgcaatctaaatactaaaacgattcaacctctaacaaatc-------aaagtcaacaaaacgttcatatcactt |
27083305 |
T |
|
| Q |
240 |
caattttcaaccgtaacagt |
259 |
Q |
| |
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||||||||||| | |||||| |
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| T |
27083304 |
caattttcaactgaaacagt |
27083285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 502 - 544
Target Start/End: Complemental strand, 27083759 - 27083717
Alignment:
| Q |
502 |
atttcatttgaagctcatatgattcatgcaatctaaatactaa |
544 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27083759 |
atttcatttgaagctcatacgattcatgcaatctaaatactaa |
27083717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 27083260 - 27083191
Alignment:
| Q |
269 |
aatttcatcaacac-gagaacttcatcaactgttgccgtcatttcaacttcaacaccattcaacacaatc |
337 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||| | ||||||||||||||||||||| ||||||||||||| |
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| T |
27083260 |
aattacatcaacactgagaatttcatcaactactaccgtcatttcaacttcaacactattcaacacaatc |
27083191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 27083893 - 27083846
Alignment:
| Q |
203 |
atcaaaaattaaagtcaacaaaacgttcatatcactgcaattttcaac |
250 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||| ||||||||||| |
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| T |
27083893 |
atcaaaaatcaaagtcaacaaaatgttcatatcacttcaattttcaac |
27083846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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