View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0908_low_141 (Length: 279)
Name: NF0908_low_141
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_141 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 58 - 279
Target Start/End: Original strand, 6265916 - 6266137
Alignment:
| Q |
58 |
attttcacacacaattctatccctatctcttctccatttgcatcctctccaactcagaggaacatatgcagaatattctcacttagaataaaaaattgta |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6265916 |
attttcacacacaattctatccctatctcttctccatttgcatcctctccaactcagaggaacatatgcagaatattctctcttagaataaaaaattgta |
6266015 |
T |
|
| Q |
158 |
ctaaaatgataattgtaatcagtcaatttaaaagacgcattgttcctctttttcagatcttatattgaccgtttatattttgtttgtttaagggttgttt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6266016 |
ctaaaatgataattgtaatcagtcaatttaaaagacgtattgttcccctttttcggatcttatattgaccgtttatattttgtttgtttaatggttgttt |
6266115 |
T |
|
| Q |
258 |
atactcttctctaatccttttg |
279 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6266116 |
atactcttctctaatccttttg |
6266137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 564 times since January 2019
Visitors: 6696