View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_143 (Length: 274)
Name: NF0908_low_143
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_143 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 3814176 - 3813947
Alignment:
| Q |
30 |
caagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcaccaccggtaatggtcatagta |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3814176 |
caagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcaccactggtaatggtcatagta |
3814077 |
T |
|
| Q |
130 |
ttgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttcctctactaacaaaccctttaaatgcatatagttnn |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3814076 |
ttgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttcctctactaacaaaccctttaaatgcatatagttaa |
3813977 |
T |
|
| Q |
230 |
nnnnnnnctaaactaagtcatagttaaggt |
259 |
Q |
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||||||||||||||||||||||| |
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| T |
3813976 |
aaaaaaactaaactaagtcatagttaaggt |
3813947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 3803507 - 3803316
Alignment:
| Q |
30 |
caagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcaccaccggtaatggtcatagta |
129 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3803507 |
caagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcaccactggtaatggtcatagta |
3803408 |
T |
|
| Q |
130 |
ttgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttcctctactaacaaaccctttaaatgcat |
221 |
Q |
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| T |
3803407 |
ttgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttcctctactaaccaaccctttaaatgcat |
3803316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 2866273 - 2866109
Alignment:
| Q |
30 |
caagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcaccaccggtaatggtcatagta |
129 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || |||||||| | ||||||||||||||||| ||||| |||||||| |||||||||| ||| |
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| T |
2866273 |
caagccatgtcaaggaattgggggcaaaattggcaaagtaactcttaccttaatggacaaagtctttcctttgttgtcaccacaagtaatggtcacagtg |
2866174 |
T |
|
| Q |
130 |
ttgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttc |
194 |
Q |
| |
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| || ||||| |||| ||| || | ||||||||||||| || ||||||||||||||||||||| |
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|
| T |
2866173 |
tggtttcattcaatgctgctcctgctggttggtcctttggtcagacctacactggaaggcagttc |
2866109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 27476860 - 27476807
Alignment:
| Q |
36 |
atgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaa |
89 |
Q |
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|||||||| |||||||| ||||||||||| |||||||||||| | ||||||||| |
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|
| T |
27476860 |
atgtcaagaaattggggccaaaattggcaaagcaactcttatcttaatggacaa |
27476807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 27488118 - 27488065
Alignment:
| Q |
36 |
atgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaa |
89 |
Q |
| |
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|||||||| |||||||| ||||||||||| |||||||||||| | ||||||||| |
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| T |
27488118 |
atgtcaagaaattggggtcaaaattggcaaagcaactcttatcttaatggacaa |
27488065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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