View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_150 (Length: 265)
Name: NF0908_low_150
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_150 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 543685 - 543428
Alignment:
| Q |
8 |
cgaagaatatattgctttggagtgtagtgatattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttacctta |
107 |
Q |
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| T |
543685 |
cgaagaaaatactgctttggagtgtagtgatattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtgtttacctta |
543586 |
T |
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| Q |
108 |
ttgttttactattaagaccgatgaactagcatcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaaggg |
207 |
Q |
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| T |
543585 |
ttgttttactattaagactgataaactaacatcaatattcaaggttattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcatcggaaaggg |
543486 |
T |
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| Q |
208 |
agtcgtaccatataacacagctctagtttttattatgaaaaatgctattgtgcacgac |
265 |
Q |
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| T |
543485 |
agtcgtaccatatagcacaactctagtttttattatgaaaaatgctattgtgcacgac |
543428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 40720934 - 40720710
Alignment:
| Q |
8 |
cgaagaatatattgctttggagtgtagtgatattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttacctta |
107 |
Q |
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| T |
40720934 |
cgaagaaaatactgctttggagtgtagtggtattgatgatcataatgaccatagcaacaaagaatattgatgcttattttttgtttcggtatttacttta |
40720835 |
T |
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| Q |
108 |
ttgttttactattaagaccgatgaactagcatcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaaggg |
207 |
Q |
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| T |
40720834 |
ttgttttactattaatatagataaattagcatcaatattcaggagtattcattgagcaaattgtgtgtagcagcgtgtcgtgcaaattcgtcggaaaggg |
40720735 |
T |
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| Q |
208 |
agtcgtaccatataacacagctcta |
232 |
Q |
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| T |
40720734 |
agtcgtaccatatagcacagctcta |
40720710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 16085919 - 16085698
Alignment:
| Q |
8 |
cgaagaatatattgctttggagtgtagtgatattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttacctta |
107 |
Q |
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| T |
16085919 |
cgaagaaaatactgctttggagggtagttttattgatgatcatagtgaccatagcaacaaagaatattgatacttattttttgttttagtatttacttta |
16085820 |
T |
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| Q |
108 |
ttgttttactattaagaccgatgaactagcatcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaaggg |
207 |
Q |
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| T |
16085819 |
ttgttttactattaatacagataaactagcatcaatattcaaggctattcattgagcaaattatgtgtagcagcgtgtcgtgcaaattcgtcggaaaggg |
16085720 |
T |
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| Q |
208 |
agtcgtaccatataacacagct |
229 |
Q |
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| T |
16085719 |
agtcgtaccatatagcacagct |
16085698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 32722422 - 32722215
Alignment:
| Q |
24 |
ttggagtgtagtgatattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttaccttattgttttactatta-- |
121 |
Q |
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| T |
32722422 |
ttggagtgaagtggtatagatgatcacagtgatcatagcaataaagaatattgaagcttattttttattttagtatttactttattgttttact-ttagt |
32722324 |
T |
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| Q |
122 |
agaccgatgaactagcatcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaagggagtcgtaccatata |
221 |
Q |
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| T |
32722323 |
atatagataaactagtatcaatatttaaggttattcattgaacaaattgtgtgtatcagcgtgtcgtgtaaattcgttggaaagggaatcgtgctatata |
32722224 |
T |
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| Q |
222 |
acacagctc |
230 |
Q |
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| T |
32722223 |
gcacagctc |
32722215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 231
Target Start/End: Original strand, 52769207 - 52769382
Alignment:
| Q |
57 |
catagcaacaaagaatattgatgcttattttttgttttagtatttaccttattgttttactatta--agaccgatgaactagcatcaatattcaagacta |
154 |
Q |
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| T |
52769207 |
catagcaataaagaatattgatgcttattttttgttttagtatttactttattgttttact-ttagtatatggataaactagtatcagtatttaaggtta |
52769305 |
T |
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| Q |
155 |
ttcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaagggagtcgtaccatataacacagctct |
231 |
Q |
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| T |
52769306 |
ttcattgagcaagttgtgtgtagcagcgtgtcgtgcaaattcgtcgaaaaggtagacgtgctatataacacaactct |
52769382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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