View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_152 (Length: 264)
Name: NF0908_low_152
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_152 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 25903466 - 25903723
Alignment:
| Q |
7 |
tcgaataatatcaaaaaggcattgatatcgaagaaaacccaagacgaattacgttcgaaattcgtttccatgactgacattcaacgagcttctcttcccc |
106 |
Q |
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| T |
25903466 |
tcgaagaatatcaaaaaggcattgatatcgaagaaaacccaagacgaattacgttcgaaattcgtttccatgactgacattcaacgagcttctcttcccc |
25903565 |
T |
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| Q |
107 |
atgcgctttgtggtcatgatgttcttggtgccgccaaaactggttctggaaaaacacttgctttcattattcctgtgagtgttgttttgattagtgtatt |
206 |
Q |
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| T |
25903566 |
atgcgctttgtggtcgtgatgttcttggtgccgccaaaactggttctggaaaaacacttgctttcattattcctgtgagtgttgttttgattagtgtatt |
25903665 |
T |
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| Q |
207 |
tgggttaggggcttagggttttagttatttgattttgaaatttgaatgattttggtca |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25903666 |
tgggttaggggcttagggttttagttatttgattttgaaatttgaatgattttggtca |
25903723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 40427592 - 40427430
Alignment:
| Q |
27 |
attgatatcgaagaaaacccaagacgaattacgttcgaaattcgtttccatgactgacattcaacgagcttctcttccccatgcgctttgtggtcatgat |
126 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| | |||| |
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| T |
40427592 |
attgatatcgaagaaaacccaagacgaattgcattcgaaattcgtttccatgactaaaattcaacgagcttctcttcctcatgcgctttgtggccgtgat |
40427493 |
T |
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| Q |
127 |
gttcttggtgccgccaaaactggttctggaaaaacacttgctttcattattcctgtgagtgtt |
189 |
Q |
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| T |
40427492 |
gttcttggtgccgccaaaactggttctggaaaaacacttgctttcattattcctgtgagtgtt |
40427430 |
T |
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