View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_161 (Length: 251)
Name: NF0908_low_161
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_161 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 2843783 - 2843998
Alignment:
| Q |
36 |
taggataggaatggattaggataggatatgatagaattatttctaaactttcttttttgtttacaaaataaaaaatacctcactttcaaattaaacatca |
135 |
Q |
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| T |
2843783 |
taggataggaatggattaggataggataggatagaattatttctaaactttcttttttgtttacaaaataaaaaatacctcactttcaaattaaacatca |
2843882 |
T |
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| Q |
136 |
agatagttccacgtctaaaatttctaccacgtctagttcaagatatcaaggatataataccttcaacctacaacaaatttcattaatttgtttttaagaa |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2843883 |
agatagttccacgtctaaaatttctaccacgtctagttcaagatatcaaggatataataccttcaacctacaacaaatttcattaatttgtttttaagaa |
2843982 |
T |
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| Q |
236 |
aatgaaattgattaaa |
251 |
Q |
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|||||||||||||||| |
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| T |
2843983 |
aatgaaattgattaaa |
2843998 |
T |
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