View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_162 (Length: 251)
Name: NF0908_low_162
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_162 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3465011 - 3464788
Alignment:
| Q |
1 |
ttctctggggcctcctcaattctttttggagccctggattgtgcttgtttcttctctttcaattctagagcactaatctgctactacatgttcagattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3465011 |
ttctctggggcctcctcaattctttttggagccctggattgtgcttgtttcttctctttcaattctagagcactaatctgctactacatgttcagattca |
3464912 |
T |
|
| Q |
101 |
ttaggtatcacattttgttcttgaatctttctgtttatcttttgtcattgttttc-aaagggtgtatgaataattttgtatatctctttaccgaggtttc |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3464911 |
ttaggtatcacattttcttcttgaatctttctgtttatcttttgtcattgttttcaaaagggtgtatgaataattttgtatatctctttaccgaggtttc |
3464812 |
T |
|
| Q |
200 |
aaattgtgatgcgactaatatagt |
223 |
Q |
| |
|
||||||||||| |||||||||||| |
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|
| T |
3464811 |
aaattgtgatgtgactaatatagt |
3464788 |
T |
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