View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_170 (Length: 246)
Name: NF0908_low_170
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_170 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3497999 - 3498240
Alignment:
| Q |
1 |
gcaagaatcaaggagaaaatgcatattaaaggaatatatcatattgccagtgaaaaaacacaagtttaggcataaatgtttaaaaaacttgaacagttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
3497999 |
gcaagaatcaaggagaaaatgcatattaaaggaatatatcatattgccagtgaaaaaacacaggtttagacataaatgtttaaaaaacttgaacagttta |
3498098 |
T |
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| Q |
101 |
acacaatatgggtaaaataaggcttcacagatcttagtgccattcaattgtaattagtttataaatatggttaggataataatgaatgtaaataataatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498099 |
acacaatatgggtaaaataaggcttcacagatcttagtgccattcaattgtaattagtttataaatatggttaggataataatgaatgtaaataataatg |
3498198 |
T |
|
| Q |
201 |
tacaaagaatatattgaaattgaggattcaagttagaattat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498199 |
tacaaagaatatattgaaattgaggattcaagttagaattat |
3498240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 3510281 - 3510387
Alignment:
| Q |
116 |
aataaggcttcacagatcttagtgccattcaattgtaattagtttataaatatggttaggataataatgaatgtaaataataatgtacaaagaatatatt |
215 |
Q |
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|||||| ||||||||||||| |||||||||||||| || |||| |||||||||||| |||||| | |||||||||||||||||||||||||||||||| |
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| T |
3510281 |
aataagacttcacagatcttggtgccattcaattggtatcagtt-ataaatatggtttagataatgacgaatgtaaataataatgtacaaagaatatatt |
3510379 |
T |
|
| Q |
216 |
gaaattga |
223 |
Q |
| |
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|||||||| |
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| T |
3510380 |
gaaattga |
3510387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31952084 - 31951839
Alignment:
| Q |
1 |
gcaagaatcaaggagaaaatgcatattaaaggaatatatcatattgccagtgaaaaaacacaagtttaggcataaatgtttaaaaaacttgaacagttta |
100 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||| ||| |
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| T |
31952084 |
gcaagaatcaaggataaaatgcatattaaaaaaatatatcatattgccagtgaaaaaacacaggtttagacataaatgtttaacaaatttgaacagctta |
31951985 |
T |
|
| Q |
101 |
acacaata--tgggtaaaataaggcttcacagatcttagtgccattcaattgtaattagtttataaatatggttaggataataatgaatgtaaataataa |
198 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||| | |||||||| ||| | ||||||||||||||| |||||||||||||||||||||||| |
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| T |
31951984 |
acacaatatgtgggtaaaataaggcttcatagatcttagtgtcgttcaattggaatca-attataaatatggttaagataataatgaatgtaaataataa |
31951886 |
T |
|
| Q |
199 |
tgtacaaagaatatattgaaattga-----ggattcaagttagaatt |
240 |
Q |
| |
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| T |
31951885 |
tgtaaaaagaatatattgaaattgaatgggggattcaagttagaatt |
31951839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31950511 - 31950758
Alignment:
| Q |
1 |
gcaagaatcaaggagaaaatgcatattaaaggaatatatcatattgccagtgaaaaaacacaagtttaggcataaatgtttaaaaaacttgaacagttta |
100 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||||||| |||||||| ||| |
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| T |
31950511 |
gcaaaaatcaagaagaaaatgaatattaaaggaatatatcatattgccaatgaaaaatcacatgtttagatataaatgtttaaaaaatttgaacagctta |
31950610 |
T |
|
| Q |
101 |
acacaatatg--ggtaaaataaggcttcacagatcttagtgccattcaattgtaattagtttataaatatggttaggataataatgaatgtaaataataa |
198 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||||| | |||||||| ||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
31950611 |
acacaatatgtaggtaaaataaagcttcacagatcttagtgtcgttcaattggaatcag-ttataaatatggttaggataataatgaatgtaaataataa |
31950709 |
T |
|
| Q |
199 |
tgtacaaagaatatattgaaattga-----ggattcaagttagaattat |
242 |
Q |
| |
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|||||| | |||||| ||||||||| ||||||||||||||||||| |
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| T |
31950710 |
tgtacacaaaatataatgaaattgaagaggggattcaagttagaattat |
31950758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 22927501 - 22927370
Alignment:
| Q |
83 |
aaaaacttgaacagtttaacacaatatgggtaaaataaggcttcacagatcttagtgccattcaattgtaattagtttataaatatggttaggataataa |
182 |
Q |
| |
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||||||| ||||| ||||||||| |||||||||||||||||||| |||||||| || |||||||||| || ||||| ||| ||||||||| ||||| | |
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| T |
22927501 |
aaaaactaaaacagattaacacaaaatgggtaaaataaggcttcatagatcttaatgtcattcaattggaaatagtt-atatatatggttaaaataatga |
22927403 |
T |
|
| Q |
183 |
tgaatgtaaataataatgtacaaagaatatatt |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
22927402 |
tgaatgtaaataataatgtacaaagaatatatt |
22927370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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