View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_171 (Length: 243)
Name: NF0908_low_171
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_171 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 11826269 - 11826403
Alignment:
| Q |
20 |
aaaaacattctgttttagatattgatgtcaatagggatataaacctggatattgaaccagtaagaggtgcctaaaatgattaactgtatgtctagtttca |
119 |
Q |
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| T |
11826269 |
aaaaacattctgttttagatattgatgtcaatagggatataaacctggatattgaaccggtaagaggtgcctaaaatgattaactgtatgtctagtttca |
11826368 |
T |
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| Q |
120 |
tgcatagaacaggttaacttgtactaatatctgat |
154 |
Q |
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| T |
11826369 |
tgcctagaacaggttaacttgtactaatatctgat |
11826403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 23094197 - 23094327
Alignment:
| Q |
24 |
acattctgttttagatattgatgtcaatagggatataaacctggatattgaaccagtaagaggtgcctaaaatgattaactgtatgtctagtttcatgca |
123 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23094197 |
acattctgttttagatattgatgtgaatagggatataaacctggatattgaaccagtaagaggtgcctaaaatgattaactgtatgtctagtttcatgca |
23094296 |
T |
|
| Q |
124 |
tagaacaggttaacttgtactaatatctgat |
154 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23094297 |
tagaacaggttaacttgtactaatatctgat |
23094327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 47347690 - 47347557
Alignment:
| Q |
20 |
aaaaacattctgttttagatattgatgtcaatagggatataaacctggatattgaaccagtaagaggtgcctaaaatgattaactgtatgtctagtttca |
119 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||||||||||| |
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| T |
47347690 |
aaaaacattcttttttagatattgatgtcaatagggatataaacctggatgttgaaccggtaagaggtgcctaaaatgattaattgcatgtctagtttct |
47347591 |
T |
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| Q |
120 |
tgcatagaacaggttaacttgtactaatatctga |
153 |
Q |
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||| |||| ||| ||||||||||||||||||||| |
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| T |
47347590 |
tgcctagagcagattaacttgtactaatatctga |
47347557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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