View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0908_low_177 (Length: 235)
Name: NF0908_low_177
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_177 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 48666466 - 48666403
Alignment:
| Q |
9 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggtt |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48666466 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggtt |
48666403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 48655890 - 48655834
Alignment:
| Q |
9 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagt |
65 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||| ||||| |||||||| ||||| |
|
|
| T |
48655890 |
agcagaggagttgaagaaaaatgcaatcaagtggaagaaggcagcggaggatgcagt |
48655834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 720 times since January 2019
Visitors: 6696