View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_179 (Length: 232)

Name: NF0908_low_179
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_179
NF0908_low_179
[»] chr2 (5 HSPs)
chr2 (1-146)||(37897194-37897339)
chr2 (1-139)||(37957858-37957996)
chr2 (1-139)||(37952123-37952261)
chr2 (4-137)||(44905697-44905830)
chr2 (4-137)||(28166852-28166985)
[»] chr3 (3 HSPs)
chr3 (2-137)||(39713002-39713137)
chr3 (4-136)||(11528612-11528744)
chr3 (7-36)||(3149633-3149662)
[»] chr4 (2 HSPs)
chr4 (4-137)||(11148747-11148880)
chr4 (4-139)||(34539314-34539449)
[»] chr7 (1 HSPs)
chr7 (4-139)||(38757833-38757968)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 37897194 - 37897339
Alignment:
Q  1 gtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37897194 gtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggc 37897293  T
Q  101 aagtcaaggaatgtgagaggaagagaagttgttgttgttgatgatg 146  Q
    ||||||||||||||||||||||||||| |||||| ||| |||||||    
T  37897294 aagtcaaggaatgtgagaggaagagaaattgttgctgtagatgatg 37897339  T

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Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 37957996 - 37957858
Alignment:
Q  1 gtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggc 100  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||  ||||  |||||||| |||||| || ||||||    
T  37957996 gtgtttgagagatggaagtgttgttttacaaaaatgggttgttgaatgtggaaagtgatagaagaataagcgttcaacatagactggacctgcaaaaggc 37957897  T
Q  101 aagtcaaggaatgtgagaggaagagaagttgttgttgtt 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37957896 aagtcaaggaatgtgagaggaagagaagttgttgttgtt 37957858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 37952261 - 37952123
Alignment:
Q  1 gtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggc 100  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||  ||||  |||||||| |||||| || ||||||    
T  37952261 gtgtttgagagatggaagtgttgttttagaaaaatgggttgttgaatgaggaaagtgatagaagaataagcgttcaacatagactggacctgcaaaaggc 37952162  T
Q  101 aagtcaaggaatgtgagaggaagagaagttgttgttgtt 139  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  37952161 aagtcgaggaatgtgagaggaagaaaagttgttgttgtt 37952123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 44905697 - 44905830
Alignment:
Q  4 tttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaag 103  Q
    |||||| ||||||||||||||||||||||||||  | ||| ||| || |||  | | |||||||  || | |||| |||| |||| |||| ||| || ||    
T  44905697 tttgagcgatggaagtgttgttttgcaaaaatggttggttaaataagcaaaagggtcgaagaatatgcatttaacgtagactggatcagcaaaatgctag 44905796  T
Q  104 tcaaggaatgtgagaggaagagaagttgttgttg 137  Q
    ||||  ||||||||||||||| ||||||||||||    
T  44905797 tcaaaaaatgtgagaggaagataagttgttgttg 44905830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 28166852 - 28166985
Alignment:
Q  4 tttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaag 103  Q
    ||||||||| |||||||||||||||||||||||  | ||||||| || |||  | | ||| |||   | | |||  |||| ||||||||| ||| |||||    
T  28166852 tttgagagaaggaagtgttgttttgcaaaaatggttggttgaataagcaaaagggtcgaaaaatattcatttaatgtagactggaccagcaaaatgcaag 28166951  T
Q  104 tcaaggaatgtgagaggaagagaagttgttgttg 137  Q
    ||||  ||||||| ||||||| ||||||||||||    
T  28166952 tcaaaaaatgtgaaaggaagataagttgttgttg 28166985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 39713002 - 39713137
Alignment:
Q  2 tgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggca 101  Q
    |||||||||||||||||||||||||||||||||||  | || |||||||||||  |||||||||||  |||| || | |||||||||||||| ||| |||    
T  39713002 tgtttgagagatggaagtgttgttttgcaaaaatggttggtagaatgaggaaaaggatagaagaataagcgtttagcgtagattggaccagcaaaatgca 39713101  T
Q  102 agtcaaggaatgtgagaggaagagaagttgttgttg 137  Q
    ||||||| ||||||||||||||| |||| |||||||    
T  39713102 agtcaagaaatgtgagaggaagataagtagttgttg 39713137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 11528612 - 11528744
Alignment:
Q  4 tttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaag 103  Q
    |||||||||||| ||||||||||||||||||||  | ||||||| || |||  ||||||||||| ||||| |||| |||| |||||| || ||| |||||    
T  11528612 tttgagagatggtagtgttgttttgcaaaaatggttggttgaataagcaaaaggatagaagaataggcgtttaacgtagactggacctgcaaaatgcaag 11528711  T
Q  104 tcaaggaatgtgagaggaagagaagttgttgtt 136  Q
    || ||||||||||||||||||||||||||||||    
T  11528712 tcgaggaatgtgagaggaagagaagttgttgtt 11528744  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 3149662 - 3149633
Alignment:
Q  7 gagagatggaagtgttgttttgcaaaaatg 36  Q
    ||||||||||||||||||||||||||||||    
T  3149662 gagagatggaagtgttgttttgcaaaaatg 3149633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 11148880 - 11148747
Alignment:
Q  4 tttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaag 103  Q
    |||||||||||||||||||||||||||||||||  | ||||||| || |||  | | |||||||  || | |||| |||| ||||||| | ||| |||||    
T  11148880 tttgagagatggaagtgttgttttgcaaaaatggttggttgaataagtaaaagggtcgaagaatatgcatttaacgtagactggaccaacaaaatgcaag 11148781  T
Q  104 tcaaggaatgtgagaggaagagaagttgttgttg 137  Q
    ||||  ||||||||||||||| ||||||||||||    
T  11148780 tcaaaaaatgtgagaggaagataagttgttgttg 11148747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 34539314 - 34539449
Alignment:
Q  4 tttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaag 103  Q
    |||||||||||||||||||||||||| ||||||  | ||||||| || |||  | | |||||||  || | |||  |||||||||||||| ||| |||||    
T  34539314 tttgagagatggaagtgttgttttgcgaaaatggttggttgaataagcaaaagggtcgaagaatatgcatttaatgtagattggaccagcaaaatgcaag 34539413  T
Q  104 tcaaggaatgtgagaggaagagaagttgttgttgtt 139  Q
    ||||  ||| ||||||||||| ||||||||||||||    
T  34539414 tcaaaaaatatgagaggaagataagttgttgttgtt 34539449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 38757833 - 38757968
Alignment:
Q  4 tttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaag 103  Q
    |||||||||||||||||||||||||||||||||  | ||||||| || |||  | | |||||||  || | |||| |||| ||||||| | ||| |||||    
T  38757833 tttgagagatggaagtgttgttttgcaaaaatggttggttgaataagcaaaagggtcgaagaatatgcatttaacgtagactggaccaacaaaatgcaag 38757932  T
Q  104 tcaaggaatgtgagaggaagagaagttgttgttgtt 139  Q
     |||  ||||| ||||||||| ||||||||||||||    
T  38757933 gcaaaaaatgttagaggaagataagttgttgttgtt 38757968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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