View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_184 (Length: 223)
Name: NF0908_low_184
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_184 |
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Alignment Details
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 48666466 - 48666398
Alignment:
| Q |
9 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg |
77 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48666466 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg |
48666398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 48628223 - 48628155
Alignment:
| Q |
9 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg |
77 |
Q |
| |
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||||||| ||||||||||||||||| |||| ||| |||| ||| |||||||||||||| |||||||| |
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| T |
48628223 |
agcagaggagttgaagaaaaatgcaatgaagtggaagaaggaggcagaggaagcagtggccgttggtgg |
48628155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 48584640 - 48584572
Alignment:
| Q |
9 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg |
77 |
Q |
| |
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|||||||| ||||||| ||||||||| ||||| ||| ||| |||||||||||| |||| |||||||| |
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| T |
48584640 |
agcagagaagttgaagcaaaatgcaaacaagtggaagaagaaggcggaggaagctttggccgttggtgg |
48584572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 48655890 - 48655834
Alignment:
| Q |
9 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagt |
65 |
Q |
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||||||| ||||||||||||||||| ||||| ||| ||||| |||||||| ||||| |
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| T |
48655890 |
agcagaggagttgaagaaaaatgcaatcaagtggaagaaggcagcggaggatgcagt |
48655834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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