View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_19 (Length: 493)
Name: NF0908_low_19
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 94 - 481
Target Start/End: Complemental strand, 12970049 - 12969661
Alignment:
| Q |
94 |
caaatctggtcaacctcccaatccatcgtggtttacccccaaaaggtacttttaatttannnnnnnngcatttcagtgtctttctatgtttagaatttct |
193 |
Q |
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| T |
12970049 |
caaatctggtcaacctcccaatccatcgtggtttacccccaaaaggtacttttaattt------tttgcatttcagtgtctttctatgtttagaatttct |
12969956 |
T |
|
| Q |
194 |
cataaatctaat-----aataaatatattgtggtgatttcaggcttcttataatattttgtattataaatttgatcaattatgtggatcgaggagctata |
288 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12969955 |
cataaatctaatctaataataaatatattgtggtgatttcaggcttcttataatattttgtattataaatttgatcaattatgtggatcgaggagctata |
12969856 |
T |
|
| Q |
289 |
gctagcaatggtgttaatggaactcttgaaacttgtactgaatctggtgtttgtaccgctggtactggaattcagtatgtgttgacttatct-ctaatct |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12969855 |
gctagcaatggtgttaatggaactcttgaaacttgtactgaatctggtgtttgtaccgctggtactggaattcagtatgtgttgacttatctcctaatct |
12969756 |
T |
|
| Q |
388 |
tgtatttacttcctgtttgtcattctaatta-nnnnnnnacatttcaggggggattttaacttgagtaattttcaagatggagttttgtcatctg |
481 |
Q |
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| T |
12969755 |
tgtatttacttcctgtctgtcattctaattattttttttacatttcaggggggattttaacttgagtaattttcaagatggtgttttgtcatctg |
12969661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 2343667 - 2343736
Alignment:
| Q |
241 |
atattttgtattataaatttgatcaattatgtggatcgaggagctatagctagcaatggtgttaatggaa |
310 |
Q |
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| T |
2343667 |
atattttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatggaa |
2343736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 2336256 - 2336325
Alignment:
| Q |
241 |
atattttgtattataaatttgatcaattatgtggatcgaggagctatagctagcaatggtgttaatggaa |
310 |
Q |
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||||||||| | || |||||| | || ||| |||||| |||||| ||||||||||||||||||||||||| |
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| T |
2336256 |
atattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatggaa |
2336325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 481
Target Start/End: Original strand, 2336999 - 2337048
Alignment:
| Q |
432 |
caggggggattttaacttgagtaattttcaagatggagttttgtcatctg |
481 |
Q |
| |
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||||||||||||||| |||| |||||| ||||||||||||||||||||| |
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| T |
2336999 |
caggggggattttaaattgaacaattttgaagatggagttttgtcatctg |
2337048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 481
Target Start/End: Complemental strand, 36799418 - 36799370
Alignment:
| Q |
433 |
aggggggattttaacttgagtaattttcaagatggagttttgtcatctg |
481 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| | ||||||| |
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| T |
36799418 |
aggggggattttaacttgaccaattttcaagatggagttctttcatctg |
36799370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 36800241 - 36800204
Alignment:
| Q |
272 |
tggatcgaggagctatagctagcaatggtgttaatgga |
309 |
Q |
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|||| |||||||| |||||||||||||||||||||||| |
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| T |
36800241 |
tggaccgaggagcaatagctagcaatggtgttaatgga |
36800204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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