View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_2 (Length: 849)

Name: NF0908_low_2
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_2
NF0908_low_2
[»] chr2 (8 HSPs)
chr2 (81-849)||(11834366-11835134)
chr2 (81-849)||(11821230-11821998)
chr2 (704-782)||(11917654-11917732)
chr2 (175-303)||(11918121-11918249)
chr2 (704-782)||(11933825-11933903)
chr2 (704-782)||(11947046-11947124)
chr2 (710-782)||(8338659-8338731)
chr2 (719-804)||(35538944-35539029)
[»] chr4 (10 HSPs)
chr4 (710-834)||(36107982-36108106)
chr4 (746-833)||(38125561-38125648)
chr4 (705-782)||(21482766-21482843)
chr4 (715-849)||(38090711-38090845)
chr4 (185-303)||(38126088-38126206)
chr4 (716-849)||(36080103-36080236)
chr4 (710-774)||(34971539-34971603)
chr4 (710-774)||(36100783-36100847)
chr4 (710-764)||(36090229-36090283)
chr4 (103-156)||(38126235-38126288)
[»] chr6 (1 HSPs)
chr6 (710-833)||(6838744-6838867)


Alignment Details
Target: chr2 (Bit Score: 745; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 81 - 849
Target Start/End: Original strand, 11834366 - 11835134
Alignment:
Q  81 ctgttgcattaggtgatggatcatcccaattcactgaatattgaattttgaacaaatttccagcacggtgaggaaatggcgttgcatcggccggaatctc 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11834366 ctgttgcattaggtgatggatcatcccaattcactgaatattgaattttgaacaaatttccagcacggtgaggaaatggcgttgcatcggccggaatctc 11834465  T
Q  181 agcgatttttccaccataagggttgaaaacaaatccaatttttcctaactcaatcatctttttccatatcccttccaaatcatcttttgaaatagctttc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11834466 agcgatttttccaccataagggttgaaaacaaatccaatttttcctaactcaatcatctttttccatatcccttccaaatcatcttttgaaatagctttc 11834565  T
Q  281 tgaacataatcagattttctcttacctaaacccgccgaattaacattcctatccaaaagattcaccggtttcttgccatttttaagactcaattcatcgt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11834566 tgaacataatcagattttctcttacctaaacccgccgaattaacattcctatccaaaagattcaccggtttcttgccatttttaagactcaattcatcgt 11834665  T
Q  381 tataccatagaacagaattaatccaactcaattcaatacaatcttttttcttcaaacctaaacgtggagattccttccctaaaatctttactacctcgcc 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  11834666 tataccatagaacagaattaatccaactcaattcaatacaatcttttttcttcaaacctaaacgtggaaattccttccctaaaatctttactacctcgtc 11834765  T
Q  481 agcgcggcctagaaacaatgcaacaacagaagctctaatagtttttgttcctttgactaccgtagaagatttaggttgcaaaagaagcctcatgaaaatc 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11834766 agcgcggcctagaaacaatgcaacaacagaagctctaatagtttttgttcctttgacaaccgtagaagatttaggttgcaaaagaagcctcatgaaaatc 11834865  T
Q  581 ctattatcagttgttggagcaacttgttgccattgaacaacaagatcagttgcattctgttccaatgttttctcaattcggaaaacagtaacggttttag 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11834866 ctattatcagttgttggagcaacttgttgccattgaacaacaagatcagttgcattctgttccaatgttttctcaattcggaaaacagtaacggttttag 11834965  T
Q  681 gaaccgctactaatttaatggtataagacagaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcct 780  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11834966 gaaccgctactaatttaatggtataagacagaacaacaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcct 11835065  T
Q  781 attcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaacggataaaccatattt 849  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  11835066 attcaaaagccttcccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattt 11835134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 81 - 849
Target Start/End: Complemental strand, 11821998 - 11821230
Alignment:
Q  81 ctgttgcattaggtgatggatcatcccaattcactgaatattgaattttgaacaaatttccagcacggtgaggaaatggcgttgcatcggccggaatctc 180  Q
    ||||||||||||||| |||||||| ||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  11821998 ctgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaattcccggcacggtgaggaaatggcgttgcatcggccggaatctc 11821899  T
Q  181 agcgatttttccaccataagggttgaaaacaaatccaatttttcctaactcaatcatctttttccatatcccttccaaatcatcttttgaaatagctttc 280  Q
    ||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821898 agccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttccatatcccttccaaatcatcttttgaaatagctttc 11821799  T
Q  281 tgaacataatcagattttctcttacctaaacccgccgaattaacattcctatccaaaagattcaccggtttcttgccatttttaagactcaatt-catcg 379  Q
    ||||||||||||||||| |||||||| ||| |||| ||||||| |||||||||||||||| || ||||||||   || || |||| | |||    ||||     
T  11821798 tgaacataatcagatttcctcttaccgaaagccgcggaattaagattcctatccaaaagactctccggtttcgcacctttgttaaaa-tcatcagcatca 11821700  T
Q  380 ttataccatagaacagaattaatccaactcaattcaatacaatcttttttcttcaaacctaaacgtggagattccttccctaaaatctttactacctcgc 479  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||| || ||| ||||| | |  ||||||||||||  |||||  ||      
T  11821699 ttataccatataacagaattaatccaactcaattcaatacaatctgttttcttcaatcccaaaagtggaaactgtttccctaaaatccctactagttcct 11821600  T
Q  480 cagcgcggcctagaaacaatgcaacaacagaagctctaatagtttttgttcctttgactaccgtagaagatttaggttgcaaaagaagcctcatgaaaat 579  Q
    | || | ||| || ||||  ||||||||||||||||||||||||||||||||||| || ||| |||||| | |||||||||||||||||||||| ||||     
T  11821599 cggccctgccgaggaacatagcaacaacagaagctctaatagtttttgttcctttaacaaccttagaagttataggttgcaaaagaagcctcataaaaag 11821500  T
Q  580 cctattatcagttgttggagcaacttgttgccattgaacaacaagatcagttgcattctgttccaatgttttctcaattcggaaaacagtaacggtttta 679  Q
    ||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||| |    
T  11821499 cctattatccgttgtcggcgcaacttgttgccattgaacaacaagatcagtagcattctgttccaaagttttctcaatacgaaaaacagtaacggtttca 11821400  T
Q  680 ggaaccgctactaatttaatggtataagacagaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcc 779  Q
    |||||||||||||||||||  |||||||||||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  11821399 ggaaccgctactaatttaacagtataagacagaacaacaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcc 11821300  T
Q  780 tattcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaacggataaaccatattt 849  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  11821299 tattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattt 11821230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 704 - 782
Target Start/End: Complemental strand, 11917732 - 11917654
Alignment:
Q  704 taagacagaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctat 782  Q
    ||||| |||||||||||||| ||||| |||||||| |||| ||||||||||||||||||||| ||||||||||| ||||    
T  11917732 taagaaagaacaacaccaaagttagctccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctat 11917654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 11918249 - 11918121
Alignment:
Q  175 aatctcagcgatttttccaccataagggttgaaaacaaatccaatttttcctaactcaatcatctttttccatatcccttccaaatcatcttttgaaata 274  Q
    ||||||| | ||||||||||||||||| |||||||  | | ||  |||| | ||||| |||||||||||||| || ||||||||| | ||||| |||||     
T  11918249 aatctcatccatttttccaccataaggattgaaaaacattacacctttttccaactcgatcatctttttccaaattccttccaaaccctctttagaaatt 11918150  T
Q  275 gctttctgaacataatcagattttctctt 303  Q
    | || ||  ||||||||||||||||||||    
T  11918149 ggttcctttacataatcagattttctctt 11918121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 704 - 782
Target Start/End: Complemental strand, 11933903 - 11933825
Alignment:
Q  704 taagacagaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctat 782  Q
    ||||| ||||||||||||||  |||| |||||||| |||   |||||||||||||||||||| ||||||||||| ||||    
T  11933903 taagaaagaacaacaccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctat 11933825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 704 - 782
Target Start/End: Complemental strand, 11947124 - 11947046
Alignment:
Q  704 taagacagaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctat 782  Q
    ||||| ||||||||||||||  |||| |||||||| |||   |||||||||||||||||||| ||||||||||| ||||    
T  11947124 taagaaagaacaacaccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctat 11947046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 710 - 782
Target Start/End: Complemental strand, 8338731 - 8338659
Alignment:
Q  710 agaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctat 782  Q
    |||| |||||||||| ||||||||||||| || |  ||||||||||| |||||||| ||||||||||| ||||    
T  8338731 agaataacaccaaaactagcaccaccaccacccctaatagcccaaaacagatcttctcccattgattttctat 8338659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 804
Target Start/End: Complemental strand, 35539029 - 35538944
Alignment:
Q  719 ccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatc 804  Q
    |||||| ||||| ||| ||| |||| ||| |||||||||| |||||| ||||||||||| ||||| | || |||||| || |||||    
T  35539029 ccaaaagtagcagcactacctcctcttatggcccaaaaaatatcttctcccattgattttctattgagaatccttccatttacatc 35538944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 710 - 834
Target Start/End: Complemental strand, 36108106 - 36107982
Alignment:
Q  710 agaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaa 809  Q
    |||| |||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||||||||| ||||  | ||   | |||||||||||||  |    
T  36108106 agaataacaccaaaactagcaccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaacca 36108007  T
Q  810 tttcagcatcaataatattatcaac 834  Q
    |||  ||||||||||||||||||||    
T  36108006 tttttgcatcaataatattatcaac 36107982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 746 - 833
Target Start/End: Complemental strand, 38125648 - 38125561
Alignment:
Q  746 atagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcagcatcaataatattatcaa 833  Q
    |||||||||||||| ||||||||||||||||||||||  | || ||| || |||||||||| |||||||||||||| || ||||||||    
T  38125648 atagcccaaaaaagttcttcacccattgatttcctatcaagaatcctaccattaacatcaacaatttcagcatcaacaacattatcaa 38125561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 705 - 782
Target Start/End: Complemental strand, 21482843 - 21482766
Alignment:
Q  705 aagacagaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctat 782  Q
    |||||| || ||||||| || ||||||||||||| |||| ||||||||||||||||||||| ||||||||||| ||||    
T  21482843 aagacaaaataacaccataactagcaccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctat 21482766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 715 - 849
Target Start/End: Complemental strand, 38090845 - 38090711
Alignment:
Q  715 aacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttca 814  Q
    |||||||||| |||| |||||||| ||||  ||||||||||||| |||||| |||||||||| |||||  |  |  ||||| | |||||||| ||| | |    
T  38090845 aacaccaaaactagctccaccaccacctctaatagcccaaaaaacatcttcccccattgattccctatcaagcactcttccatcaacatcaacaatctta 38090746  T
Q  815 gcatcaataatattatcaacggataaaccatattt 849  Q
    ||||| | |||||||||||| ||||| ||| ||||    
T  38090745 gcatccaaaatattatcaacagataacccaaattt 38090711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 303
Target Start/End: Complemental strand, 38126206 - 38126088
Alignment:
Q  185 atttttccaccataagggttgaaaacaaatccaatttttcctaactcaatcatctttttccatatcccttccaaatcatcttttgaaatagctttctgaa 284  Q
    ||||||||||| ||||||||||||   ||||| | |||||| || ||||||| ||| ||  |||||||||||||  ||||||||||||| |  ||||  |    
T  38126206 atttttccaccgtaagggttgaaagtcaatcctacttttcccaattcaatcagcttcttatatatcccttccaacccatcttttgaaattggattctcca 38126107  T
Q  285 cataatcagattttctctt 303  Q
    ||||||||||||| |||||    
T  38126106 cataatcagatttcctctt 38126088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 716 - 849
Target Start/End: Complemental strand, 36080236 - 36080103
Alignment:
Q  716 acaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaatttcag 815  Q
    ||||||||| | ||||||||||| || | |||||||||||| | |||||| ||||||||||| ||||  | ||  || || |||||||||| |||||  |    
T  36080236 acaccaaaacttgcaccaccaccaccccttatagcccaaaataaatcttctcccattgattttctatcaagaatactaccattaacatcaacaatttttg 36080137  T
Q  816 catcaataatattatcaacggataaaccatattt 849  Q
    | ||||| ||||||||||| |||| |||| ||||    
T  36080136 cgtcaattatattatcaacagatagaccaaattt 36080103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 710 - 774
Target Start/End: Original strand, 34971539 - 34971603
Alignment:
Q  710 agaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattga 774  Q
    |||| |||||||||| ||||||||||||| ||||  ||||||||||| |||||||| ||||||||    
T  34971539 agaataacaccaaaactagcaccaccaccacctctgatagcccaaaagagatcttctcccattga 34971603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 710 - 774
Target Start/End: Complemental strand, 36100847 - 36100783
Alignment:
Q  710 agaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattga 774  Q
    |||| |||||||||| ||||||||||||| || | |||||||||||| |||||||| ||||||||    
T  36100847 agaataacaccaaaactagcaccaccaccaccccttatagcccaaaatagatcttctcccattga 36100783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 764
Target Start/End: Original strand, 36090229 - 36090283
Alignment:
Q  710 agaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatctt 764  Q
    |||| |||||||||| |||| |||||||| |||| ||||||||||||||||||||    
T  36090229 agaataacaccaaaactagccccaccaccacctcttatagcccaaaaaagatctt 36090283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 38126288 - 38126235
Alignment:
Q  103 atcccaattcactgaatattgaattttgaacaaatttccagcacggtgaggaaa 156  Q
    |||||||||||| ||||| ||||| ||||||| ||| || ||||||||||||||    
T  38126288 atcccaattcaccgaatactgaatcttgaacagattccctgcacggtgaggaaa 38126235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 710 - 833
Target Start/End: Complemental strand, 6838867 - 6838744
Alignment:
Q  710 agaacaacaccaaaattagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaaaaa 809  Q
    |||| |||||||||| ||||||||||||| |||| ||| ||||||||||||||||| ||||||||||| ||||  | ||   | ||||||||||||| ||    
T  6838867 agaataacaccaaaactagcaccaccaccacctcttatggcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaacaa 6838768  T
Q  810 tttcagcatcaataatattatcaa 833  Q
    |||  || ||||||||||||||||    
T  6838767 tttttgcgtcaataatattatcaa 6838744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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