View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_209 (Length: 205)
Name: NF0908_low_209
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_209 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 30210333 - 30210214
Alignment:
| Q |
83 |
ccaataatatacctcaactcaatactcttaagtatatgagtgtaattaatattcccaaagccaaacgtgaccctcctatgtaatccnnnnnnnggcatat |
182 |
Q |
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| T |
30210333 |
ccaacaatatacctcaactcaatactc--aagtatatgagtgtaattaatattcccaaagccaaacgtgaccctcctatgtaatcc-aaaaaaggcatat |
30210237 |
T |
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| Q |
183 |
tcgaatagagaaaagtacctgca |
205 |
Q |
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||||||||||||||||||||||| |
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| T |
30210236 |
tcgaatagagaaaagtacctgca |
30210214 |
T |
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