View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_213 (Length: 203)

Name: NF0908_low_213
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_213
NF0908_low_213
[»] chr3 (4 HSPs)
chr3 (20-138)||(49234533-49234651)
chr3 (20-150)||(49233950-49234080)
chr3 (129-191)||(49234447-49234509)
chr3 (141-191)||(49233876-49233926)
[»] chr1 (2 HSPs)
chr1 (20-150)||(50862397-50862527)
chr1 (141-184)||(50862551-50862594)
[»] chr2 (3 HSPs)
chr2 (53-150)||(24455752-24455848)
chr2 (141-191)||(1615171-1615221)
chr2 (141-191)||(24455872-24455922)
[»] chr8 (3 HSPs)
chr8 (77-186)||(14839077-14839187)
chr8 (53-155)||(43227984-43228089)
chr8 (141-191)||(43228108-43228158)
[»] chr7 (1 HSPs)
chr7 (77-186)||(27962503-27962613)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 49234651 - 49234533
Alignment:
Q  20 ggcatgtatttataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcaga 119  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  49234651 ggcatgtatttacaatgctactatagtcttcttccaagatatatgcttatggaatgcgtttctttattttcatatccagatgtgtgcttaattattcaga 49234552  T
Q  120 gctggttcaaggtaatttt 138  Q
    |||||||||||||||||||    
T  49234551 gctggttcaaggtaatttt 49234533  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 49234080 - 49233950
Alignment:
Q  20 ggcatgtattt-ataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcag 118  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||  ||||||| |||||||||||| ||||||||||||||||||||    
T  49234080 ggcatgtattttataatgctactatagtcttcttccaaaatatatgcttatggaatgtctttcttttttttcatatccatatgtgtgcttaactattcag 49233981  T
Q  119 agctggttcaaggtaattttcttgcataattt 150  Q
    ||||||||||||||||||||| ||||||||||    
T  49233980 agctggttcaaggtaattttc-tgcataattt 49233950  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 49234509 - 49234447
Alignment:
Q  129 aggtaattttcttgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagc 191  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||    
T  49234509 aggtgattttcttgcataatttagagctggttttctgcatgtgggctaatgtaatgcagcagc 49234447  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 49233926 - 49233876
Alignment:
Q  141 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagc 191  Q
    |||||||||||||| |||||||| |||||||||||||||||||||| ||||    
T  49233926 tgcataatttagagctggttttcggcatgtggactaatgtagtgcagcagc 49233876  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 50862397 - 50862527
Alignment:
Q  20 ggcatgtattt-ataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcag 118  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||  |||||| ||||||||||||||||||||||||| ||||||||    
T  50862397 ggcatgtattttataatgctactatagtcttcttccaaaatatatgcttatggaatgtttttcttcattttcatatccaaatgtgtgcttatctattcag 50862496  T
Q  119 agctggttcaaggtaattttcttgcataattt 150  Q
    ||||||||||||||| ||||| ||||||||||    
T  50862497 agctggttcaaggtagttttc-tgcataattt 50862527  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 50862551 - 50862594
Alignment:
Q  141 tgcataatttagagttggttttctgcatgtggactaatgtagtg 184  Q
    |||||||||||||| || ||||| ||||||||||||||||||||    
T  50862551 tgcataatttagagctgattttcggcatgtggactaatgtagtg 50862594  T

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Target: chr2 (Bit Score: 70; Significance: 9e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 24455752 - 24455848
Alignment:
Q  53 ccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcagagctggttcaaggtaattttcttgcataattt 150  Q
    |||| ||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24455752 ccaaaatatatgcttatgaaatgtgtttctttattttcatatacagatgtgtgcttaactattcagagctggttcaaggtaattttc-tgcataattt 24455848  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 1615221 - 1615171
Alignment:
Q  141 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagc 191  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  1615221 tgcataatttagagctggttttctacatgtggactaatgtagtgcagcagc 1615171  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 24455872 - 24455922
Alignment:
Q  141 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagc 191  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  24455872 tgcataatttagagctggttttcggcatgtggactaatgtaatgcaacagc 24455922  T

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Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 14839077 - 14839187
Alignment:
Q  77 gtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataatttagagttggttttctgcatgtggac 174  Q
    |||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||| |||| |||||    
T  14839077 gtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttc-gacatagtttagagctggttttcagcatatggac 14839175  T
Q  175 taatgtagtgca 186  Q
    ||||||| ||||    
T  14839176 taatgtaatgca 14839187  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 43227984 - 43228089
Alignment:
Q  53 ccaagatatatgcttatggaat--gcgtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataat 148  Q
    |||| |||||||||||||||||  | ||||||||||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||| ||||||||    
T  43227984 ccaaaatatatgcttatggaatatgtgtttctttattttcatatccagatgtttgtgcttaactattcagagttggttcaaggtaattttc-tgcataat 43228082  T
Q  149 ttagagt 155  Q
    || ||||    
T  43228083 ttggagt 43228089  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 43228108 - 43228158
Alignment:
Q  141 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagc 191  Q
    |||||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  43228108 tgcataatttagagttggctttcggcatgtggactaatgtagtgcagcagc 43228158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 27962613 - 27962503
Alignment:
Q  77 gtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataatttagagttggttttctgcatgtggac 174  Q
    |||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||| |||| |||||    
T  27962613 gtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttc-gacatagtttagagctggttttcagcatatggac 27962515  T
Q  175 taatgtagtgca 186  Q
    ||||||| ||||    
T  27962514 taatgtaatgca 27962503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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