View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_22 (Length: 474)
Name: NF0908_low_22
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 30 - 474
Target Start/End: Complemental strand, 11286725 - 11286280
Alignment:
| Q |
30 |
ctcatctggtttatgagaatggatacatgaagcaacagattcatactgtgagtgtgagatactattccnnnnnnnnnnnnnn-aataattttggttgctt |
128 |
Q |
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| T |
11286725 |
ctcatctggtttatgagaatggatacatgaagcaacagattcatactgtgagtgtgagatactattcctttttgtttttttttaataattttggttgctt |
11286626 |
T |
|
| Q |
129 |
ttattgtttcaatgttcattgaatgcattaaaaatatttgttgttaaaagttgagaagtaatcattgattattcacatgctataactttttctttttgaa |
228 |
Q |
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| T |
11286625 |
ttattgtttcaatgttcattgaatgcattaaaaatatttgttgttaaaagttaagaagtaatcattgattattcacatgctataactttttctttttgaa |
11286526 |
T |
|
| Q |
229 |
taggcttctgctgcaactaccacagacaatagctgtgattctgtggtaatgagtggtcaaaaccaacagcaaaacccaactcagcgtcctcaaagggatg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11286525 |
taggcttctgctgcaactaccacagacaatagctgtgattctgtggtaatgagtggtcaaaaccaacagcaaaacccaactcagcgtcctcaaagggatg |
11286426 |
T |
|
| Q |
329 |
caaacaacccagctgggttagtaacaccttttttattttgttgcattgtgtaatgaattgctatgctgttcattttaatttaatgttgacataatttatt |
428 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
11286425 |
caaacaacccagctgggttagtaacacattttttattttgttgcattgtgttatgaattgttatgctgttcattttaatttaatgttgacatattttatt |
11286326 |
T |
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| Q |
429 |
gtttttatgttctactagtcttctcgccgtggctgaggagaccctg |
474 |
Q |
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| T |
11286325 |
gtttttatgttctaccagtcttctcgccgtggctgaggagaccctg |
11286280 |
T |
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