View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_220 (Length: 202)

Name: NF0908_low_220
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_220
NF0908_low_220
[»] chr8 (2 HSPs)
chr8 (15-158)||(36378261-36378402)
chr8 (18-163)||(4878366-4878509)
[»] chr2 (2 HSPs)
chr2 (15-158)||(31488132-31488273)
chr2 (15-150)||(39817043-39817179)
[»] chr7 (6 HSPs)
chr7 (18-163)||(42679574-42679717)
chr7 (18-163)||(3933970-3934113)
chr7 (13-129)||(21767882-21767996)
chr7 (13-74)||(19788213-19788274)
chr7 (123-163)||(16533940-16533980)
chr7 (123-163)||(16631682-16631722)
[»] chr4 (3 HSPs)
chr4 (15-158)||(13775528-13775669)
chr4 (18-163)||(42469435-42469578)
chr4 (13-163)||(33246069-33246220)
[»] chr3 (1 HSPs)
chr3 (15-158)||(4532212-4532354)
[»] chr5 (1 HSPs)
chr5 (15-147)||(11850985-11851115)
[»] chr1 (2 HSPs)
chr1 (13-129)||(4820152-4820266)
chr1 (13-129)||(4831952-4832066)
[»] scaffold0050 (1 HSPs)
scaffold0050 (13-147)||(30621-30753)
[»] chr6 (1 HSPs)
chr6 (13-129)||(20643037-20643151)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 36378261 - 36378402
Alignment:
Q  15 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgg 114  Q
    |||||||||| ||||||||||||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||  ||||||| | | |||    
T  36378261 aacctccaaagattcaccatattcagcaggaatatattttttgtcatatattggttcatcatgctcctctttttcaaaggctt--catgaatgttaccgg 36378358  T
Q  115 gaccatagtcatcatatattggatctccttttcccttttcttca 158  Q
    ||||||| |||||||||||||||||||||||||||| |||||||    
T  36378359 gaccatattcatcatatattggatctccttttccctcttcttca 36378402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 4878509 - 4878366
Alignment:
Q  18 ctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgggac 117  Q
    ||||||| ||||||||||||| ||| ||| |||| |||| |||||||||||||||| ||||||||| |||||||||||||  ||||||| |||||| |||    
T  4878509 ctccaaatattcaccatattcagcaagaacatattcttcatcatatattggttcattatgctcctccttttcaaaggctt--catgaatgtcatcgagac 4878412  T
Q  118 catagtcatcatatattggatctccttttcccttttcttcaaacac 163  Q
    |||  ||||||||||||||||||   ||||||| ||| ||||||||    
T  4878411 cattttcatcatatattggatctatgtttccctcttcgtcaaacac 4878366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 31488273 - 31488132
Alignment:
Q  15 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgg 114  Q
    |||||||||| ||||||||||||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||  ||||||| | | |||    
T  31488273 aacctccaaagattcaccatattcagcaggaatatattttttgtcatatattggttcatcatgctcctctttttcaaaggctt--catgaatgttaccgg 31488176  T
Q  115 gaccatagtcatcatatattggatctccttttcccttttcttca 158  Q
    ||||||| |||||||||||||||||||||||||||| |||||||    
T  31488175 gaccatattcatcatatattggatctccttttccctcttcttca 31488132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 39817043 - 39817179
Alignment:
Q  15 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgg 114  Q
    |||||||||| ||||||||||||   | |||| || | |||||||||||||||| || | || |||||||||||||||   ||  ||||||| |||||||    
T  39817043 aacctccaaatattcaccatattaaactggaagatgttcttcgtcatatattggctcgttattctcctctttttcaaacaatt--catgaatgtcatcgg 39817140  T
Q  115 gaccatagt---catcatatattggatctccttttccct 150  Q
    || |||| |   ||||||||||||||| | |||||||||    
T  39817141 gaacatattcaacatcatatattggattttcttttccct 39817179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 42679574 - 42679717
Alignment:
Q  18 ctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgggac 117  Q
    ||||||| ||||||||||||| ||| ||| |||| ||||||||||||||||||| ||||||||||||||||| || ||||||  ||||| ||||||||||    
T  42679574 ctccaaatattcaccatattcagcaagaacatattcttcgtcatatattggttcgtcatgctcctctttttccaatgcttca--tgaatgtcatcgggac 42679671  T
Q  118 catagtcatcatatattggatctccttttcccttttcttcaaacac 163  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||    
T  42679672 catattcatcatatattggatctccttttccctcttcttcaaacac 42679717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 3934113 - 3933970
Alignment:
Q  18 ctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgggac 117  Q
    ||||||| ||||||||||||| ||| ||| |||| |||| |||||||||||||||| ||||||||| |||||||||||||  ||||||| |||||| |||    
T  3934113 ctccaaatattcaccatattcagcaagaacatattcttcatcatatattggttcattatgctcctccttttcaaaggctt--catgaatgtcatcgagac 3934016  T
Q  118 catagtcatcatatattggatctccttttcccttttcttcaaacac 163  Q
    |||  ||||||||||||||||||   ||||||| ||| ||||||||    
T  3934015 cattttcatcatatattggatctatgtttccctcttcgtcaaacac 3933970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 21767882 - 21767996
Alignment:
Q  13 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatc 112  Q
    |||||||||||| |||| |||||||| ||||||| |||| ||||||||||||||||||| |||| |||||||||||||||  |||  ||||||| |||||    
T  21767882 ttaacctccaaagattctccatattcagcaggaagatattcttcgtcatatattggttcgtcattctcctctttttcaaacactt--catgaatgtcatc 21767979  T
Q  113 gggaccatagtcatcat 129  Q
     |||||||| |||||||    
T  21767980 aggaccatattcatcat 21767996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 19788274 - 19788213
Alignment:
Q  13 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatc 74  Q
    |||||||||||| ||||||||||||| ||| ||| |||| |||| |||||||||| ||||||    
T  19788274 ttaacctccaaagattcaccatattcagcaagaacatattcttcatcatatattgattcatc 19788213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 16533940 - 16533980
Alignment:
Q  123 tcatcatatattggatctccttttcccttttcttcaaacac 163  Q
    |||||||||||||||||||||| ||||| ||||| ||||||    
T  16533940 tcatcatatattggatctccttctccctcttctttaaacac 16533980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 16631722 - 16631682
Alignment:
Q  123 tcatcatatattggatctccttttcccttttcttcaaacac 163  Q
    |||||||||||||||||||||| ||||| ||||| ||||||    
T  16631722 tcatcatatattggatctccttctccctcttctttaaacac 16631682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 13775669 - 13775528
Alignment:
Q  15 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgg 114  Q
    |||||||||| ||||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||  ||||||| | | | |    
T  13775669 aacctccaaagattcaccatattcagcatgaatatatttttcgtcatatattggttcatcatgctcctctttttcaaaggctt--catgaatgttaccag 13775572  T
Q  115 gaccatagtcatcatatattggatctccttttcccttttcttca 158  Q
    ||||||| |||||||||||||||||||||||||||| |||||||    
T  13775571 gaccatattcatcatatattggatctccttttccctcttcttca 13775528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 42469435 - 42469578
Alignment:
Q  18 ctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgggac 117  Q
    ||||||| ||||||||||||| ||| ||| |||| ||||||||||||||||||| ||||||||||||||||| || ||||  ||||||| ||||||||||    
T  42469435 ctccaaatattcaccatattcagcaagaacatattcttcgtcatatattggttcgtcatgctcctctttttccaatgctt--catgaatgtcatcgggac 42469532  T
Q  118 catagtcatcatatattggatctccttttcccttttcttcaaacac 163  Q
    |||| ||||||||||||||||||   ||||||| ||| ||||||||    
T  42469533 catattcatcatatattggatctatgtttccctcttcgtcaaacac 42469578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 33246220 - 33246069
Alignment:
Q  13 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatc 112  Q
    ||||||||  || ||| ||||||||| ||| |||||||| |||||||||||||||| |  ||||||||||||||||||||| |||  ||||||| |||||    
T  33246220 ttaacctctcaagatttaccatattcagcaagaatatattcttcgtcatatattgggttgtcatgctcctctttttcaaagactt--catgaatgtcatc 33246123  T
Q  113 gggacca---tagtcatcatatattggatctccttttcccttttcttcaaacac 163  Q
    ||||| |   |  |||||||||||| |||||   ||||||| ||||||||||||    
T  33246122 gggactatgttcatcatcatatattagatctatatttccctcttcttcaaacac 33246069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 4532354 - 4532212
Alignment:
Q  15 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatat-catcg 113  Q
    |||||||||| ||||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||  ||||| | || |     
T  4532354 aacctccaaagattcaccatattcagcatgaatatatttttcgtcatatattggttcatcatgctcctctttttcaaaggcttca--tgaatgttcacca 4532257  T
Q  114 ggaccatagtcatcatatattggatctccttttcccttttcttca 158  Q
    |||||||| |||||||||||||||||||||||||||| |||||||    
T  4532256 ggaccatattcatcatatattggatctccttttccctcttcttca 4532212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 11850985 - 11851115
Alignment:
Q  15 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgg 114  Q
    |||||||||| ||||||||||||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||  ||||||| | | ||     
T  11850985 aacctccaaagattcaccatattcagcaggaatatattttttgtcatatattggttcatcatgctcctctttttcaaaggctt--catgaatgttaccga 11851082  T
Q  115 gaccatagtcatcatatattggatctccttttc 147  Q
    ||||||| |||||||||||||||||||||||||    
T  11851083 gaccatattcatcatatattggatctccttttc 11851115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 4820266 - 4820152
Alignment:
Q  13 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatc 112  Q
    |||||||||||| |||| |||||||| ||||||| ||||  |||||| ||||||||||  |||| |||||||||||||||  |||  ||||||| |||||    
T  4820266 ttaacctccaaagattcgccatattcagcaggaagatattattcgtcgtatattggtttgtcattctcctctttttcaaacactt--catgaatgtcatc 4820169  T
Q  113 gggaccatagtcatcat 129  Q
    ||||||||| |||||||    
T  4820168 gggaccatactcatcat 4820152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 4832066 - 4831952
Alignment:
Q  13 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatc 112  Q
    |||||||||||| |||| |||||||| ||||||| ||||  |||||| ||||||||||  |||| |||||||||||||||  |||  ||||||| |||||    
T  4832066 ttaacctccaaagattcgccatattcagcaggaagatattattcgtcgtatattggtttgtcattctcctctttttcaaacactt--catgaatgtcatc 4831969  T
Q  113 gggaccatagtcatcat 129  Q
    ||||||||| |||||||    
T  4831968 gggaccatactcatcat 4831952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 30753 - 30621
Alignment:
Q  13 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatc 112  Q
    |||||||||||| |||||||||||||  || ||| |||| |||||||||| |||||||| ||||  || ||||||||||   |||  ||||||| |||||    
T  30753 ttaacctccaaagattcaccatattcaacatgaagatattcttcgtcatacattggttcttcattatcatctttttcaataactt--catgaatgtcatc 30656  T
Q  113 gggaccatagtcatcatatattggatctccttttc 147  Q
    | || |||| |||| ||||||||||||||||||||    
T  30655 gagaacatattcattatatattggatctccttttc 30621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 20643151 - 20643037
Alignment:
Q  13 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatc 112  Q
    ||||||||| || ||| |||||||||  || |||||||| |||| |||||||||||||  |||||||||||||| |||||| |||  ||||||| |||||    
T  20643151 ttaacctcccaagatttaccatattcaacaagaatatattcttcatcatatattggtttgtcatgctcctctttgtcaaagactt--catgaatgtcatc 20643054  T
Q  113 gggaccatagtcatcat 129  Q
    ||||||||  |||||||    
T  20643053 gggaccatgttcatcat 20643037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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