View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_221 (Length: 201)

Name: NF0908_low_221
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_221
NF0908_low_221
[»] chr8 (2 HSPs)
chr8 (57-181)||(21560744-21560867)
chr8 (76-139)||(11426818-11426880)
[»] chr7 (1 HSPs)
chr7 (57-181)||(17034438-17034561)
[»] chr3 (2 HSPs)
chr3 (57-181)||(43264815-43264938)
chr3 (76-139)||(26216771-26216833)
[»] chr2 (3 HSPs)
chr2 (57-181)||(37900991-37901114)
chr2 (76-139)||(5967504-5967566)
chr2 (89-133)||(652612-652656)
[»] chr6 (5 HSPs)
chr6 (136-181)||(15372284-15372329)
chr6 (136-181)||(15351857-15351902)
chr6 (136-180)||(15321699-15321743)
chr6 (136-180)||(15375074-15375118)
chr6 (136-176)||(15354880-15354920)
[»] chr4 (1 HSPs)
chr4 (76-139)||(5432166-5432228)
[»] chr5 (1 HSPs)
chr5 (106-139)||(10185023-10185056)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 21560867 - 21560744
Alignment:
Q  57 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 156  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21560867 tattgatgataaagggtaggacaattcatt-aagaaaaacaattcaataaaaataaatttaaaccattaactacaatctctattttattttatgattttg 21560769  T
Q  157 actttaatttctaatacaaatgaat 181  Q
    |||||||||||||||||||||||||    
T  21560768 actttaatttctaatacaaatgaat 21560744  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 11426880 - 11426818
Alignment:
Q  76 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 139  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||| ||||||||    
T  11426880 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacgatctctat 11426818  T

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Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 17034438 - 17034561
Alignment:
Q  57 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 156  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17034438 tattgatgataaagggtaggacaattcatt-aagaaaaacaattcaacaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 17034536  T
Q  157 actttaatttctaatacaaatgaat 181  Q
    |||||||||||||||||||||||||    
T  17034537 actttaatttctaatacaaatgaat 17034561  T

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Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 43264938 - 43264815
Alignment:
Q  57 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 156  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43264938 tattgatgataaagggtaggacaattcatt-aagaaaaacaattcaacaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 43264840  T
Q  157 actttaatttctaatacaaatgaat 181  Q
    |||||||||||||||||||||||||    
T  43264839 actttaatttctaatacaaatgaat 43264815  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 26216771 - 26216833
Alignment:
Q  76 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 139  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||| ||||||||    
T  26216771 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacgatctctat 26216833  T

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Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 37901114 - 37900991
Alignment:
Q  57 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 156  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37901114 tattgaggataaagggtaggacaattcatt-aagaaaaacaattcaacaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 37901016  T
Q  157 actttaatttctaatacaaatgaat 181  Q
    |||||||||||||||||||||||||    
T  37901015 actttaatttctaatacaaatgaat 37900991  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 5967566 - 5967504
Alignment:
Q  76 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 139  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||||||||||||    
T  5967566 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacaatctctat 5967504  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 652656 - 652612
Alignment:
Q  89 agaaaaacaattcaagaaaaataaatttaaaccattaactacaat 133  Q
    |||||||  |||||| ||||||||||||||||||||| |||||||    
T  652656 agaaaaaggattcaacaaaaataaatttaaaccattatctacaat 652612  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 15372284 - 15372329
Alignment:
Q  136 ctattttattttatgattttgactttaatttctaatacaaatgaat 181  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  15372284 ctattttattttatgattttgactttcatttctaatacaaatgaat 15372329  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 15351857 - 15351902
Alignment:
Q  136 ctattttattttatgattttgactttaatttctaatacaaatgaat 181  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||    
T  15351857 ctattttatttcatgattttgactttcatttctaatacaaatgaat 15351902  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 15321699 - 15321743
Alignment:
Q  136 ctattttattttatgattttgactttaatttctaatacaaatgaa 180  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  15321699 ctattttagtttatgattttgactttcatttctaatacaaatgaa 15321743  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 15375118 - 15375074
Alignment:
Q  136 ctattttattttatgattttgactttaatttctaatacaaatgaa 180  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  15375118 ctattttattttatgattttgactttcattcctaatacaaatgaa 15375074  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 15354920 - 15354880
Alignment:
Q  136 ctattttattttatgattttgactttaatttctaatacaaa 176  Q
    |||||||| ||||||| ||||||||| ||||||||||||||    
T  15354920 ctattttagtttatgaatttgactttcatttctaatacaaa 15354880  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 5432166 - 5432228
Alignment:
Q  76 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 139  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||| ||||||||    
T  5432166 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacgatctctat 5432228  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 10185023 - 10185056
Alignment:
Q  106 aaaataaatttaaaccattaactacaatctctat 139  Q
    |||||||||| |||||||||||||||||||||||    
T  10185023 aaaataaattaaaaccattaactacaatctctat 10185056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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