View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_23 (Length: 473)

Name: NF0908_low_23
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_23
NF0908_low_23
[»] chr6 (1 HSPs)
chr6 (30-463)||(24254523-24254956)
[»] chr7 (10 HSPs)
chr7 (34-463)||(19326082-19326502)
chr7 (253-463)||(19374530-19374740)
chr7 (253-463)||(19344672-19344882)
chr7 (166-211)||(19779275-19779320)
chr7 (95-141)||(22080470-22080516)
chr7 (324-384)||(12820092-12820152)
chr7 (96-140)||(12820321-12820365)
chr7 (258-298)||(18997860-18997900)
chr7 (160-208)||(19351400-19351448)
chr7 (96-140)||(19721618-19721662)
[»] chr5 (7 HSPs)
chr5 (105-208)||(29647304-29647407)
chr5 (100-216)||(29641981-29642097)
chr5 (105-216)||(29597881-29597992)
chr5 (324-384)||(29597734-29597794)
chr5 (252-293)||(29642139-29642180)
chr5 (252-293)||(29647456-29647497)
chr5 (350-386)||(29642213-29642249)
[»] chr4 (2 HSPs)
chr4 (101-223)||(53790143-53790265)
chr4 (337-391)||(53790391-53790445)
[»] chr2 (2 HSPs)
chr2 (160-212)||(18909160-18909212)
chr2 (99-193)||(18921106-18921200)
[»] chr1 (1 HSPs)
chr1 (322-390)||(4366665-4366733)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 30 - 463
Target Start/End: Complemental strand, 24254956 - 24254523
Alignment:
Q  30 ggtataatatctgaaaaattaggatcttttaaagagcctcgcaacggttcatattgctggcgtagcttcacatttgggtatgataattcaactggaactt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  24254956 ggtataatatctgaaaaattaggatcttttaaagagcctcgcaacggttcatattgcagtcgtagcttcacatttgggtatgataattcaactggaactt 24254857  T
Q  130 ataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaatttcaagttttcctccttttgaccatgctat 229  Q
    |||||||||||||| | |||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  24254856 ataaggtggtgttcatatgttatagtaaactgaaagttttcagtttgaaggataatatttggagaaaaatttcaaggtttcctccttttgaccatgccat 24254757  T
Q  230 tattcttacctttagtaacaaccaaggagtgtatttgagtggcacagttaattggtttgccattcgaaataaggccatttataattcttataataaggat 329  Q
    |  ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24254756 tcctcttacctttagtaacaatgaaggagtgtatttgagtggcacagttaattggtttgccattcgaaataaggccatttataattcttataataaggat 24254657  T
Q  330 attaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcggggtattgatgaagtgccagatattg 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24254656 attaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcggggtgttgatgaagtgccagatattg 24254557  T
Q  430 aaccgactattgctgtgttgatggactgcctttg 463  Q
    ||||||||||||||||||||||||||||||||||    
T  24254556 aaccgactattgctgtgttgatggactgcctttg 24254523  T

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Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 34 - 463
Target Start/End: Complemental strand, 19326502 - 19326082
Alignment:
Q  34 taatatctgaaaaattaggatcttttaaagagcctcgcaacggttcatattgctggcgtagcttcacatttgggtatgataattcaactggaacttataa 133  Q
    ||||||||||||||||| ||||||||||  |  ||||||  |||  ||||||| |||  || ||||||||||||||||||||||||||||||||||||||    
T  19326502 taatatctgaaaaattaagatcttttaacaaaactcgcattggtgtatattgcaggctcaggttcacatttgggtatgataattcaactggaacttataa 19326403  T
Q  134 ggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaatttcaagttttcctccttttgaccatgctattatt 233  Q
    ||||||| ||||| |||||||| |  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |    
T  19326402 ggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttggagaaaaatttcaagctttcctccttttgaccatgctgttact 19326303  T
Q  234 cttacctttagtaacaaccaaggagtgtatttgagtggcacagttaattggtttgccattcgaaataaggccatttataattcttataataaggatatta 333  Q
    |||  ||||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||| |||| |         |  |||||||||||||||||    
T  19326302 cttggctttagtaagaacgaaggagtgtatttgagtggcacagttaactggtttgcccttcgaagtaagtc---------tagttataataaggatatta 19326212  T
Q  334 ccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcggggtattgatgaagtgccagatattgaacc 433  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||| |||    
T  19326211 ccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcgtggtgttgatgaagtgccatatgttgcacc 19326112  T
Q  434 gactattgctgtgttgatggactgcctttg 463  Q
    |||||||||||||||||||||| |||||||    
T  19326111 gactattgctgtgttgatggaccgcctttg 19326082  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 253 - 463
Target Start/End: Original strand, 19374530 - 19374740
Alignment:
Q  253 aaggagtgtatttgagtggcacagttaattggtttgccattcgaaataaggccatttataattcttataataaggatattaccgttgagcaattcatgat 352  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||| ||||  || | || ||| || | | ||||| ||||| |||| | ||||  ||||    
T  19374530 aaggagtgtatttgagcggcactgttaactggtttgccattcgaagtaagttcagtcatgattattgtcagaaggagattactgttgggaaatttgtgat 19374629  T
Q  353 tatctcccttgatcttggtactgagacatacaagcaatttcagacccctcggggtattgatgaagtgccagatattgaaccgactattgctgtgttgatg 452  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| | ||  ||||||||||||||||| | |||| |||||||||||| |||| |    
T  19374630 tatctcccttgatcttggtaccgagacatacaagcaatttcagacccctagtggcgttgatgaagtgccagatgtggaactgactattgctgtattgacg 19374729  T
Q  453 gactgcctttg 463  Q
    |||||||||||    
T  19374730 gactgcctttg 19374740  T

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Target: chr7; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 253 - 463
Target Start/End: Complemental strand, 19344882 - 19344672
Alignment:
Q  253 aaggagtgtatttgagtggcacagttaattggtttgccattcgaaataaggccatttataattcttataataaggatattaccgttgagcaattcatgat 352  Q
    |||||||||||||||| ||||| ||||| |||| |||||||| || ||||  || | |  ||| || | | ||||||||||| |||| | ||||  ||||    
T  19344882 aaggagtgtatttgagcggcactgttaactggtatgccattcaaagtaagttcagtcaatattattgtcagaaggatattactgttgggaaatttgtgat 19344783  T
Q  353 tatctcccttgatcttggtactgagacatacaagcaatttcagacccctcggggtattgatgaagtgccagatattgaaccgactattgctgtgttgatg 452  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| | | ||  ||||||||||||||||| |||||| |||||||||||| ||||||    
T  19344782 tatctcccttgatcttggtaccgagacatacaagcaatttcagacccttagtggcgttgatgaagtgccagattttgaactgactattgctgtattgatg 19344683  T
Q  453 gactgcctttg 463  Q
    |||||||||||    
T  19344682 gactgcctttg 19344672  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 19779275 - 19779320
Alignment:
Q  166 ttttcagtttgagtgataatatttggagaaaaatttcaagttttcc 211  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||||    
T  19779275 ttttcagtttgagtgataatatttggagagatattccaagttttcc 19779320  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 22080470 - 22080516
Alignment:
Q  95 cttcacatttgggtatgataattcaactggaacttataaggtggtgt 141  Q
    |||||| ||||| |||||||||||||| | |||||||||||||||||    
T  22080470 cttcacgtttggttatgataattcaacagaaacttataaggtggtgt 22080516  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 12820152 - 12820092
Alignment:
Q  324 aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacataca 384  Q
    |||||| |||| ||||| ||| | ||||||||||||||||||||| |||| |||| |||||    
T  12820152 aaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagatataca 12820092  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 12820365 - 12820321
Alignment:
Q  96 ttcacatttgggtatgataattcaactggaacttataaggtggtg 140  Q
    ||||||||||| ||||||||||||||||  ||||| |||||||||    
T  12820365 ttcacatttggttatgataattcaactgacacttacaaggtggtg 12820321  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 18997900 - 18997860
Alignment:
Q  258 gtgtatttgagtggcacagttaattggtttgccattcgaaa 298  Q
    |||||| |||||||||| ||||||||||| |||||||||||    
T  18997900 gtgtatgtgagtggcactgttaattggttggccattcgaaa 18997860  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 19351448 - 19351400
Alignment:
Q  160 tgaaagttttcagtttgagtgataatatttggagaaaaatttcaagttt 208  Q
    |||||||||| ||||||||||||||| |||||||| | ||| |||||||    
T  19351448 tgaaagtttttagtttgagtgataatgtttggagagatattccaagttt 19351400  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 19721618 - 19721662
Alignment:
Q  96 ttcacatttgggtatgataattcaactggaacttataaggtggtg 140  Q
    ||||||||||| ||||||| |||||||  ||||||||||||||||    
T  19721618 ttcacatttggttatgatatttcaactaaaacttataaggtggtg 19721662  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 29647304 - 29647407
Alignment:
Q  105 gggtatgataattcaactggaacttataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaatttcaa 204  Q
    |||||||||||||||||| |||||||||| |  ||| | |||||||||||| |  ||||||||||| ||||  ||||||||||||||||||||||| |||    
T  29647304 gggtatgataattcaactagaacttataatgccgtggttttgtgttctagtgaggtgaaagttttccgtttcggtgataatatttggagaaaaattgcaa 29647403  T
Q  205 gttt 208  Q
    ||||    
T  29647404 gttt 29647407  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 29641981 - 29642097
Alignment:
Q  100 catttgggtatgataattcaactggaacttataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaat 199  Q
    |||| |||||||||||||||||| |||||||||| | |||| | |||||| ||||| |  |||||||||||  |||  ||||||||||||||||||||||    
T  29641981 cattcgggtatgataattcaactagaacttataatgcggtggttttgtgtactagtgaggtgaaagttttccatttcggtgataatatttggagaaaaat 29642080  T
Q  200 ttcaagttttcctcctt 216  Q
    | ||| |||| ||||||    
T  29642081 tgcaaattttactcctt 29642097  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 29597992 - 29597881
Alignment:
Q  105 gggtatgataattcaactggaacttataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaatttcaa 204  Q
    |||||||||| ||||||| |||||||||| |  ||| | |||||||||||  |  ||||||||||| ||||  |||||||||||||||||||||||  ||    
T  29597992 gggtatgatatttcaactagaacttataatgctgtggttttgtgttctagggaggtgaaagttttccgtttcggtgataatatttggagaaaaattgtaa 29597893  T
Q  205 gttttcctcctt 216  Q
    ||||| ||||||    
T  29597892 gttttactcctt 29597881  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 29597794 - 29597734
Alignment:
Q  324 aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacataca 384  Q
    |||||| |||| |||||| ||||  |||||||||| |||||||||| ||||||||||||||    
T  29597794 aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacataca 29597734  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 29642139 - 29642180
Alignment:
Q  252 caaggagtgtatttgagtggcacagttaattggtttgccatt 293  Q
    ||||||||||||||||||||||| ||||||||| || |||||    
T  29642139 caaggagtgtatttgagtggcactgttaattggatttccatt 29642180  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 29647456 - 29647497
Alignment:
Q  252 caaggagtgtatttgagtggcacagttaattggtttgccatt 293  Q
    ||||||||||||||||||||||| ||||||||| || |||||    
T  29647456 caaggagtgtatttgagtggcactgttaattggatttccatt 29647497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 29642213 - 29642249
Alignment:
Q  350 gattatctcccttgatcttggtactgagacatacaag 386  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  29642213 gattatctcgcttgatcttggtaccgagacatacaag 29642249  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 53790143 - 53790265
Alignment:
Q  101 atttgggtatgataattcaactggaacttataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaatt 200  Q
    |||||| |||||||| |  |||||| |||| ||||| |||||  |||||||| | ||  ||||| |||||| | |  |||||||||||||||   |||||    
T  53790143 atttggttatgataacttcactggatcttacaaggtagtgttaatgtgttctggcaaggtgaaaattttcaatataggtgataatatttggactgaaatt 53790242  T
Q  201 tcaagttttcctccttttgacca 223  Q
    ||||||||||||| |||||||||    
T  53790243 tcaagttttcctcgttttgacca 53790265  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 53790391 - 53790445
Alignment:
Q  337 ttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaatt 391  Q
    |||||||||  ||||||||||  |||||||||||||| ||||||||||| |||||    
T  53790391 ttgagcaatatatgattatcttgcttgatcttggtacggagacatacaaacaatt 53790445  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 18909212 - 18909160
Alignment:
Q  160 tgaaagttttcagtttgagtgataatatttggagaaaaatttcaagttttcct 212  Q
    ||||||||||||||||||| |||||| |||||||| | ||| |||||||||||    
T  18909212 tgaaagttttcagtttgagggataatgtttggagagatattccaagttttcct 18909160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 18921200 - 18921106
Alignment:
Q  99 acatttgggtatgataattcaactggaacttataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggag 193  Q
    |||||||| ||||||| |||||  | ||||||||||||||||  ||| | | |||  |   |||||||||||||||||||||||||| |||||||    
T  18921200 acatttggctatgatatttcaaacgaaacttataaggtggtggacttctctgctaacacggtgaaagttttcagtttgagtgataatgtttggag 18921106  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 4366733 - 4366665
Alignment:
Q  322 ataaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaat 390  Q
    ||||| |||||||||||||||||||  | ||| | || |||||||| ||||| ||||||||||| ||||    
T  4366733 ataagaatattaccgttgagcaatttgttattgtttcgcttgatctgggtacagagacatacaatcaat 4366665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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