View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_25 (Length: 471)
Name: NF0908_low_25
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 9593835 - 9594198
Alignment:
| Q |
1 |
aaaatgagttacttgggtgtaggtgttagtcctggaactgttccagtttatcatagtacaaacatgaaagtgttggataggagggttagaataactgagt |
100 |
Q |
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| T |
9593835 |
aaaatgagttacttgggtgtaggtgttagtcctggaactgttccagtttatcatagtacaaacatgaaagtgttggataggagggttagaataactgagt |
9593934 |
T |
|
| Q |
101 |
tggttttgaggtttgtgaatcttggtttaggagttcttgctgttgttcttattgtcactgattcacaagttagagagtttttcaccattcagaagaaagc |
200 |
Q |
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| T |
9593935 |
tggttttgaggtttgtgaatcttggcttaggagttcttgcagttgttcttattgtcactgattcacaagttagagagtttttcaccattcagaagaaagc |
9594034 |
T |
|
| Q |
201 |
taaattcactgacatgaaggctttagtgtaagatttcttctttcnnnnnnnngtttagt-tagaccaatgttttaaattttattagatgtaaaagttagt |
299 |
Q |
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| T |
9594035 |
taaattcactgacatgaaggctttagtgtaagatttcttctt-------cttcttttgtctagaccaatgttttaaattttattagatgtaaaagtcagt |
9594127 |
T |
|
| Q |
300 |
tatattgatcagttaagctataattgaccagtgtagctaacttttacatctaatatcgtaattcttgagatta |
372 |
Q |
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| T |
9594128 |
tacactggtcagttaag--ttaaccgatcagtataactaacttttacatctaatatcgtaattcttgatatta |
9594198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 9594180 - 9594108
Alignment:
| Q |
280 |
tattagatgtaaaagttagttatattgatcagttaagctataattgaccagtgtagctaacttttacatctaata |
354 |
Q |
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|||||||||||||||||||||||| ||||| ||||| || ||| ||||||||||| || |||||||||||||||| |
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| T |
9594180 |
tattagatgtaaaagttagttatactgatcggttaa-ct-taactgaccagtgtaactgacttttacatctaata |
9594108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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