View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_26 (Length: 469)
Name: NF0908_low_26
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 100 - 395
Target Start/End: Complemental strand, 40616502 - 40616206
Alignment:
| Q |
100 |
gtagtatacagttccataagcttagtttacctgtagtattgtagggactgcatactttttcga----agtggatccatatccgattttaaattgcaattt |
195 |
Q |
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| T |
40616502 |
gtagtatacagttccataaacttagtttacctgttgtattgtagggactacatactttttcgactacagtggatccatattcgattttaaattgcaattt |
40616403 |
T |
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| Q |
196 |
tgtcggggtaacagaaaatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatca |
295 |
Q |
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| T |
40616402 |
tgtcggggtaacagaaaatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatca |
40616303 |
T |
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| Q |
296 |
tatctctttaagtgtttataattttaagtcaaatacttgaatatcctttgcannnnnnnacattcttgcttctttagattttttaattgatgagtataat |
395 |
Q |
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| T |
40616302 |
tatctc-ttaagtgtttataattttaagtcaaatacttaaatatcctttgca--tttatacattcttacttctttagattttttaattgatgagtataat |
40616206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 212 - 395
Target Start/End: Original strand, 7990250 - 7990431
Alignment:
| Q |
212 |
aatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatcatatctctttaagtgtt |
311 |
Q |
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| T |
7990250 |
aatttgaaatcatgttgtaggaattatcttaatctatgatatcatctatgatgtgggagtgctataatgaaatctttgttatcatatctctttaagtgct |
7990349 |
T |
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| Q |
312 |
tataattttaagtcaaatacttgaatatcctttgcannnnnnnacattcttgcttctttagattttttaattgatgagtataat |
395 |
Q |
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| T |
7990350 |
taaaattttaagtcaaatacttgaatatcctttgca--tatttacattcttacttctttagatttttcaattgatgagtataat |
7990431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 7990131 - 7990207
Alignment:
| Q |
135 |
gtattgtagggactgcatactttttcga----agtggatccatatccgattttaaattgcaattttgtcggggtaac |
207 |
Q |
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| T |
7990131 |
gtattgtagtgactgcatacttttccgactgcagtggatccatatccgattttaaattgcaattttgtcggggtaac |
7990207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 212 - 395
Target Start/End: Original strand, 5032071 - 5032251
Alignment:
| Q |
212 |
aatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatcatatctctttaagtgtt |
311 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||| |||||||| | ||||||| | |
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| T |
5032071 |
aatttaaaatcatgttgtagaaattatcttaatctatgatattatccatgatgtgggagtgttatgatgaagtctttgtcatcatatc-ccttaagtgct |
5032169 |
T |
|
| Q |
312 |
tataattttaagtcaaatacttgaatatcctttgcannnnnnnacattcttgcttctttagattttttaattgatgagtataat |
395 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| |
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| T |
5032170 |
taaaattttaagtcaaatacttgaatatcctttgca--tttttacattcatgcttctttagatttttcaattgatgagtataat |
5032251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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