View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_27 (Length: 461)
Name: NF0908_low_27
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_27 |
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| [»] scaffold0121 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 169 - 366
Target Start/End: Original strand, 9759915 - 9760112
Alignment:
| Q |
169 |
ttattactaatttcataagaagnnnnnnnncagcaatatataactagacaaaagaaaaaccagacatgttatggtattcaatatttagattcttgtgatt |
268 |
Q |
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| T |
9759915 |
ttattactaatttcataagaagaaaaaaaccagcaatatataactagacaaaagaaaaaccagacatgttatggtattcaatatttagattcttgtgatt |
9760014 |
T |
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| Q |
269 |
ttttattgaactctaaattggaattttaacaaaatcacaatggcgtactaggattcttccaaacttgatgtcaattcaaacatacatatagttatttt |
366 |
Q |
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| T |
9760015 |
ttttattgaactctaaattgcaattttaacaaaatcacaatggcgtactaggattctttcaaacatgatgtcaattcaaacatacatatagttatttt |
9760112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 9759715 - 9759766
Alignment:
| Q |
15 |
tatcacttgaaattggatcagttgctagccacatgaatgcagtccatgcaat |
66 |
Q |
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| T |
9759715 |
tatcacttgaaattggatcagttgctagccacatgaatgcagtccatgcaat |
9759766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 174 - 364
Target Start/End: Complemental strand, 49046360 - 49046170
Alignment:
| Q |
174 |
actaatttcataagaagnnnnnnnncagcaatatataactagacaaaagaaaaaccagacatgttatggtattcaatatttagattcttgtgatttttta |
273 |
Q |
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| T |
49046360 |
actaatttcataagaaggaaaaaaacagcaatatataactagacaaaagaaaaaccagacatgttatggtattcaatatttagattcttgtgatttttta |
49046261 |
T |
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| Q |
274 |
ttgaactctaaattggaattttaacaaaatcacaatggcgtactaggattcttccaaacttgatgtcaattcaaacatacatatagttatt |
364 |
Q |
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| T |
49046260 |
ttgaactctaaattgcaattttaacaaaatcacaatggcttactacgattctaccaaacatgatgtcaatccaaacatacatatagttatt |
49046170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 49046523 - 49046467
Alignment:
| Q |
15 |
tatcacttgaaattggatcagttgctagccacatgaatgcagtccatgcaatgtttg |
71 |
Q |
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| T |
49046523 |
tatcacttgaaattggatcagttgctagccacatgactgcagtccatgcaatttttg |
49046467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 218 - 363
Target Start/End: Complemental strand, 35797 - 35652
Alignment:
| Q |
218 |
aaaagaaaaaccagacatgttatggtattcaatatttagattcttgtgattttttattgaactctaaattggaattttaacaaaatcacaatggcgtact |
317 |
Q |
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| T |
35797 |
aaaaaaaaaaacagacatgttatggtattcaatatttagattcttgtgaatttttattgaactctaaattgcaattttaacaaaatcacaatggcgtact |
35698 |
T |
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| Q |
318 |
aggattcttccaaacttgatgtcaattcaaacatacatatagttat |
363 |
Q |
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| T |
35697 |
acaattctaccaaatttgatgtcaattcaaacatacatatagttat |
35652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 35928 - 35880
Alignment:
| Q |
15 |
tatcacttgaaattggatcagttgctagccacatgaatgcagtccatgc |
63 |
Q |
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| T |
35928 |
tatcacttgaaattggatcagttgcttgccacatgactgcagtccatgc |
35880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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