View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_29 (Length: 459)

Name: NF0908_low_29
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_29
NF0908_low_29
[»] chr1 (11 HSPs)
chr1 (19-328)||(11871192-11871506)
chr1 (362-431)||(48666397-48666466)
chr1 (36-143)||(14393023-14393130)
chr1 (176-286)||(18628988-18629098)
chr1 (362-430)||(48628155-48628223)
chr1 (234-273)||(26762241-26762280)
chr1 (236-298)||(16219100-16219162)
chr1 (216-298)||(18650452-18650534)
chr1 (236-297)||(19757735-19757796)
chr1 (362-430)||(48584572-48584640)
chr1 (362-418)||(48655834-48655890)
[»] chr8 (3 HSPs)
chr8 (244-298)||(41566168-41566222)
chr8 (234-298)||(1029745-1029808)
chr8 (222-298)||(10659204-10659280)
[»] chr4 (3 HSPs)
chr4 (236-286)||(1745414-1745464)
chr4 (221-264)||(25100320-25100363)
chr4 (227-264)||(53813977-53814014)
[»] chr2 (2 HSPs)
chr2 (218-298)||(39228859-39228939)
chr2 (243-292)||(35114590-35114639)
[»] chr6 (2 HSPs)
chr6 (243-298)||(29032684-29032739)
chr6 (244-298)||(3008850-3008904)
[»] chr3 (1 HSPs)
chr3 (222-267)||(51663994-51664039)
[»] chr7 (1 HSPs)
chr7 (236-264)||(11203359-11203387)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 11871192 - 11871506
Alignment:
Q  19 catcatcacagtttaaagcctttgatttctggttcctttctgatgtttggagatctgctgatttcttggtttccgattcgccgccttcacgacggtggtc 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11871192 catcctcacagtttaaagcctttgatttctggttcctttctgatgtttggagatctgctgatttcttggtttccgattcgccgcctttacgacggtggtc 11871291  T
Q  119 ttggggcaattttggtgttcctgttcgctttggttgttaatgtaccgtgcattggttttttacggtgcttcagttacgtaaacatgaaagggtctgatac 218  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || ||||     |||||| |||||||||||| |||    
T  11871292 ttggggaagttttggtgttcctattcgctttggttgttaatgtaccgtgcgttggttttttacgatggttca-----gtaaacctgaaagggtctgttac 11871386  T
Q  219 aaaaacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctga----------gttgttttctcga 308  Q
    ||||||| ||||||||||| |||||||||||| |||||||||||||||  |||||||  |||||| |||||||||||          |||||||||||||    
T  11871387 aaaaacccgaaagaatctgattcgtttaacccgaaagggtctggttacgggcgtactgaactcataccatgatctgagttcttacgcgttgttttctcga 11871486  T
Q  309 aagagcttttattcttgatg 328  Q
    ||||||||||||||||||||    
T  11871487 aagagcttttattcttgatg 11871506  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 48666466 - 48666397
Alignment:
Q  362 agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtggt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48666466 agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtggt 48666397  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 14393023 - 14393130
Alignment:
Q  36 gcctttgatttctggttcctttctgatgtttggagatctgctgatttcttggtttccgattcgccgccttcacgacggtggtcttggggcaattttggtg 135  Q
    ||||||||||||| ||||||||  ||| | | ||||||||| |||||||||| |||||||||||||| |||||| |  |||||||||||   ||||||||    
T  14393023 gcctttgatttctagttcctttaagatctgttgagatctgcagatttcttggcttccgattcgccgctttcacgccaatggtcttggggttgttttggtg 14393122  T
Q  136 ttcctgtt 143  Q
    || |||||    
T  14393123 tttctgtt 14393130  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 286
Target Start/End: Complemental strand, 18629098 - 18628988
Alignment:
Q  176 ttttacggtgcttcagttacgtaaacatgaaagggtctgatacaaaaacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtact 275  Q
    |||| ||||| ||| |||||||||||  ||||||||||| |||||||||   |||   |||||||||||||||   ||||||||||||||||  |||| |    
T  18629098 ttttgcggtggttcggttacgtaaacccgaaagggtctgttacaaaaactcaaaatggtctggttcgtttaacttgaaagggtctggttactgacgtatt 18628999  T
Q  276 agactcatccc 286  Q
     ||||||||||    
T  18628998 ggactcatccc 18628988  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 430
Target Start/End: Complemental strand, 48628223 - 48628155
Alignment:
Q  362 agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg 430  Q
    |||||||  |||||||||||||||||  |||| ||| |||| ||| |||||||||||||| ||||||||    
T  48628223 agcagaggagttgaagaaaaatgcaatgaagtggaagaaggaggcagaggaagcagtggccgttggtgg 48628155  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 273
Target Start/End: Original strand, 26762241 - 26762280
Alignment:
Q  234 tctggttcgtttaacccaaaagggtctggttactagcgta 273  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  26762241 tctggttcgtttaacccgaaagggtctggttactaacgta 26762280  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 16219100 - 16219162
Alignment:
Q  236 tggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 298  Q
    ||||||| ||||||||||||||||||  || || |||| |||||||||||  |||||||||||    
T  16219100 tggttcgattaacccaaaagggtctgactagtaacgtattagactcatcctttgatctgagtt 16219162  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 298
Target Start/End: Complemental strand, 18650534 - 18650452
Alignment:
Q  216 tacaaaaacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 298  Q
    |||||||||| |||||  | |||||||||||||||  |||||| ||||||||  |||| | |||||||||| |||||| ||||    
T  18650534 tacaaaaacccgaaagggtgtggttcgtttaacccggaagggtatggttactgacgtattggactcatcccttgatcttagtt 18650452  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 19757735 - 19757796
Alignment:
Q  236 tggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagt 297  Q
    ||||| ||||||||| ||||||||| ||| ||| |||| | ||||||||||| |||||||||    
T  19757735 tggtttgtttaacccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 19757796  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 430
Target Start/End: Complemental strand, 48584640 - 48584572
Alignment:
Q  362 agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg 430  Q
    |||||||| ||||||| ||||||||| ||||| ||| |||  ||||||||||||  |||| ||||||||    
T  48584640 agcagagaagttgaagcaaaatgcaaacaagtggaagaagaaggcggaggaagctttggccgttggtgg 48584572  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 48655890 - 48655834
Alignment:
Q  362 agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagt 418  Q
    |||||||  ||||||||||||||||| ||||| ||| ||||| |||||||| |||||    
T  48655890 agcagaggagttgaagaaaaatgcaatcaagtggaagaaggcagcggaggatgcagt 48655834  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 41566168 - 41566222
Alignment:
Q  244 ttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 298  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| ||||||||||    
T  41566168 ttaacccataagggtctggttactaacgtattagactcatcccacgatctgagtt 41566222  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 1029808 - 1029745
Alignment:
Q  234 tctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 298  Q
    ||||||||  ||||||| |||||||||| |||||| |||| | ||||||||||| ||||||||||    
T  1029808 tctggttctattaacccgaaagggtctg-ttactaacgtattggactcatcccacgatctgagtt 1029745  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 10659280 - 10659204
Alignment:
Q  222 aacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 298  Q
    |||| ||||| |||||||||||||||||  |||| |||||||| ||  |||| | ||||||||||  ||||||||||    
T  10659280 aacccgaaaggatctggttcgtttaacctgaaagagtctggttgctgacgtattggactcatccctcgatctgagtt 10659204  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 1745414 - 1745464
Alignment:
Q  236 tggttcgtttaacccaaaagggtctggttactagcgtactagactcatccc 286  Q
    ||||||||||||||| ||||||||||||||||| |||| | ||||||||||    
T  1745414 tggttcgtttaacccgaaagggtctggttactaacgtattggactcatccc 1745464  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 25100320 - 25100363
Alignment:
Q  221 aaacctgaaagaatctggttcgtttaacccaaaagggtctggtt 264  Q
    ||||| |||||  |||||||||||||||||||||||||||||||    
T  25100320 aaacccgaaagggtctggttcgtttaacccaaaagggtctggtt 25100363  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 53814014 - 53813977
Alignment:
Q  227 gaaagaatctggttcgtttaacccaaaagggtctggtt 264  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  53814014 gaaagagtctggttcgtttaacccgaaagggtctggtt 53813977  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 39228859 - 39228939
Alignment:
Q  218 caaaaacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 298  Q
    ||||||||||||||  | ||||||  ||||||| ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  39228859 caaaaacctgaaaggctatggttctgttaacccgaaaggttctggttactaacgtattcgactcatccctcgatctgagtt 39228939  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 35114639 - 35114590
Alignment:
Q  243 tttaacccaaaagggtctggttactagcgtactagactcatcccatgatc 292  Q
    ||||||||||||||||||||||| |  |||| |||||||||||| |||||    
T  35114639 tttaacccaaaagggtctggttattgacgtattagactcatcccttgatc 35114590  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 29032684 - 29032739
Alignment:
Q  243 tttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 298  Q
    |||||||||||| ||||||||||||| |||| | ||||||||||  ||||||||||    
T  29032684 tttaacccaaaatggtctggttactaacgtattggactcatccctcgatctgagtt 29032739  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 3008904 - 3008850
Alignment:
Q  244 ttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 298  Q
    ||||||| ||||||||||||||||| |||| |||||||||||   ||||||||||    
T  3008904 ttaacccgaaagggtctggttactaacgtattagactcatccttcgatctgagtt 3008850  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 51664039 - 51663994
Alignment:
Q  222 aacctgaaagaatctggttcgtttaacccaaaagggtctggttact 267  Q
    |||| |||||| ||||||||| ||||||| ||||||||||||||||    
T  51664039 aacccgaaagagtctggttcgattaacccgaaagggtctggttact 51663994  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 11203387 - 11203359
Alignment:
Q  236 tggttcgtttaacccaaaagggtctggtt 264  Q
    |||||||||||||||||||||||||||||    
T  11203387 tggttcgtttaacccaaaagggtctggtt 11203359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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