View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_3 (Length: 797)

Name: NF0908_low_3
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_3
NF0908_low_3
[»] chr4 (1 HSPs)
chr4 (89-704)||(48655975-48656584)
[»] scaffold0209 (1 HSPs)
scaffold0209 (387-471)||(12557-12639)
[»] chr8 (4 HSPs)
chr8 (387-471)||(583797-583879)
chr8 (343-512)||(3418512-3418680)
chr8 (343-451)||(10927609-10927717)
chr8 (389-453)||(18374011-18374075)
[»] chr5 (4 HSPs)
chr5 (343-508)||(42086271-42086435)
chr5 (343-451)||(5731919-5732027)
chr5 (343-508)||(1538375-1538539)
chr5 (398-451)||(12766131-12766184)
[»] chr3 (2 HSPs)
chr3 (343-512)||(54261165-54261333)
chr3 (342-427)||(45450446-45450531)
[»] chr1 (2 HSPs)
chr1 (343-508)||(5855466-5855630)
chr1 (343-460)||(10422779-10422896)
[»] chr2 (7 HSPs)
chr2 (92-168)||(35943165-35943241)
chr2 (343-451)||(41220634-41220742)
chr2 (344-411)||(2784971-2785038)
chr2 (343-472)||(14169608-14169737)
chr2 (389-471)||(41187828-41187910)
chr2 (343-508)||(7747217-7747381)
chr2 (398-471)||(42770705-42770778)
[»] chr6 (2 HSPs)
chr6 (343-510)||(14107357-14107523)
chr6 (343-508)||(21898595-21898759)
[»] chr7 (3 HSPs)
chr7 (389-456)||(365137-365204)
chr7 (398-451)||(29151942-29151995)
chr7 (342-411)||(29805438-29805507)


Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 89 - 704
Target Start/End: Complemental strand, 48656584 - 48655975
Alignment:
Q  89 attgaggaatgttattataacaacaaaaatttgacaactttataagaacacactatttataactattgatttgactcgagaagataaaaaagaaactcat 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48656584 attgaggaatgttattataacaacaaaaatttgacaactttataagaacatactatttataactattgatttgactcgcgaagataaaaaagaaactcat 48656485  T
Q  189 aataaagtgaactatatacattacataaatacgttggtgcatgaacaactaaataattgtgcaactaacatttctaacaaaattgcactcgttgtgtaaa 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48656484 aataaagtgaactatatacattacataaatacgttggtgcatgaacaactaaataattgtccaactaacatttctaacaaaattgcactcgttgtgtaaa 48656385  T
Q  289 ttcttccccatttaattctcaataaaatattgggtacgtattcnnnnnnnnnctctttcgcaccggtttccgactcgttaatggtagacaactaatttga 388  Q
    |||||| ||||||||||||||||||||||||| ||||||||||         |||||||||| |||||| |||  | | ||||||  |||||||||        
T  48656384 ttcttctccatttaattctcaataaaatattgagtacgtattc-ttttttctctctttcgcatcggttttcgatccatcaatggtgaacaactaatccag 48656286  T
Q  389 ctcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcgaatatgtacttggaaaagagcgtcttgcgacc 488  Q
    |||||||||||||||||| |||||||| |||| |||||||||||  |||| || |||| |||||||||  || || |||||||| ||||||||||| ||     
T  48656285 ctcatgcagagaggcatgtgcacaggtcaagcgttgttcttcctgggaattgagcccgatatttctcgggtacgtccttggaaaggagcgtcttgccact 48656186  T
Q  489 ggagcccaaataacttggtttattgggtacgtattttcttacatagttggagtagtgaaaatgaaaaattacacataaaaagtaaacttcataaatgttt 588  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48656185 ggagcccaaataacttggtttattgggtacatattttcttacatggttggagtagtgaaaatgaaaaattacacataaaaagtaaacttcataaatgttt 48656086  T
Q  589 taacgtatagtattatttatttttctctaagttgttccnnnnnnncttgggtgagtaggaactatagttccaatccaaagaacgtgattgaattcatgct 688  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  48656085 taacgtatagtattatttatttttctctaagttgttcctttttttcttgggtgagtaggaactatagt-----tccaaagaacgtgattgaattcatgct 48655991  T
Q  689 tgttatagttcacatg 704  Q
    ||||||||||||||||    
T  48655990 tgttatagttcacatg 48655975  T

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Target: scaffold0209 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 387 - 471
Target Start/End: Complemental strand, 12639 - 12557
Alignment:
Q  387 gactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcgaatatgtacttggaa 471  Q
    |||||||||  |||||||||||||| ||| |||| ||||||  |||| ||||||||||||||||||||||| || || |||||||    
T  12639 gactcatgcgtagaggcatgcgcactggtcaagcgttgttc--cctaggaatcgaacccggtatttctcgagtacgtccttggaa 12557  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 387 - 471
Target Start/End: Complemental strand, 583879 - 583797
Alignment:
Q  387 gactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcgaatatgtacttggaa 471  Q
    |||||||||  |||||||||||||| ||| |||| ||||||  |||| ||||||||||||||||||||||| || || |||||||    
T  583879 gactcatgcgtagaggcatgcgcactggtcaagcgttgttc--cctaggaatcgaacccggtatttctcgagtacgtccttggaa 583797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 512
Target Start/End: Original strand, 3418512 - 3418680
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||||||||||| ||| |  ||| ||| ||| |||||| ||||||||||  ||| |||||||||| ||  |||  |||||| |||||| |||||||    
T  3418512 ctttcgcaccggtttctgacccactaaaggtggacgactaatctgactcatgcgtagacgcatgcgcactggccaagtgttgttcctcctaaaaatcgaa 3418611  T
Q  443 cccggtatttctcgaatatgtacttggaaaagagcgtcttgcgaccggagcccaaataacttggtttatt 512  Q
    |||| |||| | |  ||| || ||||| || ||||  ||||| || |||| ||||| |||||||||||||    
T  3418612 cccgatattccccagatacgtccttgg-aaggagctccttgccacgggagtccaaacaacttggtttatt 3418680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 343 - 451
Target Start/End: Complemental strand, 10927717 - 10927609
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||| ||||||||||| |  ||| |||  || ||||||  | |||||||  |||||||||||||| ||  |||| |||||| ||||| ||||||||    
T  10927717 ctttcgcatcggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctaggaatcgaa 10927618  T
Q  443 cccggtatt 451  Q
    |||||||||    
T  10927617 cccggtatt 10927609  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 389 - 453
Target Start/End: Complemental strand, 18374075 - 18374011
Alignment:
Q  389 ctcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttc 453  Q
    |||||||  |||||||||||||| ||| |||| ||||||| ||| ||||||||||| ||||||||    
T  18374075 ctcatgcgtagaggcatgcgcactggtcaagcgttgttctccctgagaatcgaacctggtatttc 18374011  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 343 - 508
Target Start/End: Complemental strand, 42086435 - 42086271
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||||||||||||||| |   || ||| ||| ||||||  | |||||||  |||||||||||||| ||| |||| ||||||  |||  ||||||||    
T  42086435 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatcgaa 42086336  T
Q  443 cccggtatttctcgaatatgtacttggaaaagagcgtcttgcgaccggagcccaaataacttggtt 508  Q
    ||||||||| ||||  || || ||||| || ||||  ||||| ||||||||||||  |||||||||    
T  42086335 cccggtattcctcgggtacgtccttgg-aaggagctccttgccaccggagcccaagcaacttggtt 42086271  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 343 - 451
Target Start/End: Original strand, 5731919 - 5732027
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||||||||||||||| |  ||| |||  || |||||| || ||||| |  |||||||||||||| ||  |||| |||||| ||||  ||||||||    
T  5731919 ctttcgcaccggtttccgacccactaaaggtgaacgactaatctggctcatacgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 5732018  T
Q  443 cccggtatt 451  Q
    |||||||||    
T  5732019 cccggtatt 5732027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 343 - 508
Target Start/End: Complemental strand, 1538539 - 1538375
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||||||||||||||| |   |||||| ||| | ||||  | |||||||  |||||||||||||| ||  |||  ||||||  |||  ||||||||    
T  1538539 ctttcgcaccggtttccgacccaccaatggtggacgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaa 1538440  T
Q  443 cccggtatttctcgaatatgtacttggaaaagagcgtcttgcgaccggagcccaaataacttggtt 508  Q
    ||||||||| | |||||| || || || || ||||  ||||| || |||||||||| |||||||||    
T  1538439 cccggtattccccgaatacgtcctcgg-aaggagctccttgccactggagcccaaacaacttggtt 1538375  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 12766184 - 12766131
Alignment:
Q  398 agaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatt 451  Q
    |||||||||| ||| ||  ||||||||||| |||| ||||||||||||||||||    
T  12766184 agaggcatgcacactggccaagcattgttcctcctcagaatcgaacccggtatt 12766131  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 343 - 512
Target Start/End: Complemental strand, 54261333 - 54261165
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||||||||||||||| |  ||| |||  || ||||||  | |||||||  |||||||||||||| ||  |||| |||||| ||||| ||||||||    
T  54261333 ctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctaggaatcgaa 54261234  T
Q  443 cccggtatttctcgaatatgtacttggaaaagagcgtcttgcgaccggagcccaaataacttggtttatt 512  Q
    ||||||||| | |   || || ||||| || ||||  ||||| || |||||||||| |||||||||||||    
T  54261233 cccggtattccccaggtacgtccttgg-aaggagctccttgccactggagcccaaacaacttggtttatt 54261165  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 427
Target Start/End: Original strand, 45450446 - 45450531
Alignment:
Q  342 tctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttc 427  Q
    |||||||||||||||||| |||| | || ||| ||| |||||| |  || ||||  |||||||||||||| ||| |||||||||||    
T  45450446 tctttcgcaccggtttccaactcatcaaaggtggacgactaatctagcttatgcgtagaggcatgcgcactggtcaagcattgttc 45450531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 343 - 508
Target Start/End: Complemental strand, 5855630 - 5855466
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||| ||||||||||| |  ||| |||  || ||||||  | |||||||  |||||||||||||| ||  |||| |||||| ||||  ||||||||    
T  5855630 ctttcgcatcggtttccgacccactaaaggtgaacgactaatccgcctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 5855531  T
Q  443 cccggtatttctcgaatatgtacttggaaaagagcgtcttgcgaccggagcccaaataacttggtt 508  Q
    ||||||||| | |||||| || ||||| || ||||  ||||| || |||||||||| |||||||||    
T  5855530 cccggtattccccgaatacgtccttgg-aaggagctccttgccactggagcccaaacaacttggtt 5855466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 343 - 460
Target Start/End: Complemental strand, 10422896 - 10422779
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||||||||||||||||    || ||| ||| ||||||  | |||||||  |||||||||||||| ||  |||  |||||| |||||  |||||||    
T  10422896 ctttcgcaccggtttccgacttaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttcctcctagaaatcgaa 10422797  T
Q  443 cccggtatttctcgaata 460  Q
    ||||||||| | ||||||    
T  10422796 cccggtattccccgaata 10422779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 35943241 - 35943165
Alignment:
Q  92 gaggaatgttattataacaacaaaaatttgacaactttataagaacacactatttataactattgatttgactcgag 168  Q
    ||||||||||| || |||||| |||||||||||||  ||| | || |||| ||||||||||||||||||| ||||||    
T  35943241 gaggaatgttactagaacaaccaaaatttgacaaccgtattaaaatacacaatttataactattgatttggctcgag 35943165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 451
Target Start/End: Complemental strand, 41220742 - 41220634
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||||||||||||||| |  ||| |||  || ||||||| | |||||||  |||||||||||||| ||  |||| |||||| ||||  ||||||||    
T  41220742 ctttcgcaccggtttccgacccactaaaggtgaacgactaattcggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 41220643  T
Q  443 cccggtatt 451  Q
    |||||||||    
T  41220642 cccggtatt 41220634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 411
Target Start/End: Complemental strand, 2785038 - 2784971
Alignment:
Q  344 tttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcac 411  Q
    ||||||||||||||||||||| | |||| | ||| |||||| ||||||||||  ||||||||||||||    
T  2785038 tttcgcaccggtttccgactcatcaatgatggacgactaatctgactcatgcgtagaggcatgcgcac 2784971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 472
Target Start/End: Original strand, 14169608 - 14169737
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||||||||||||||| |   |||||||||| ||||||  | |||||||  |||| ||||||||| ||| |||  ||||||  ||  |||||||||    
T  14169608 ctttcgcaccggtttccgacccaccaatggtagacgactaatccggctcatgcgtagagacatgcgcactggtcaagtgttgttcccccggagaatcgaa 14169707  T
Q  443 cccggtatttctcgaatatgtacttggaaa 472  Q
    |||| |||| | |||||| || ||||||||    
T  14169708 cccgatattccccgaatacgtccttggaaa 14169737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 389 - 471
Target Start/End: Complemental strand, 41187910 - 41187828
Alignment:
Q  389 ctcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcgaatatgtacttggaa 471  Q
    |||||||  |||||||||||||| ||| |||| ||||| ||||||||||| |||  ||||||| |||| ||| || |||||||    
T  41187910 ctcatgcgtagaggcatgcgcactggtcaagcgttgtttttcctaagaattgaattcggtattcctcggatacgtccttggaa 41187828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 343 - 508
Target Start/End: Complemental strand, 7747381 - 7747217
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||||||||||||||| |  ||| |||  || ||||||  | |||||||  |||||||||| ||| ||  || | |||||| ||||| ||||||||    
T  7747381 ctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcacactggccaaacgttgttcctcctaggaatcgaa 7747282  T
Q  443 cccggtatttctcgaatatgtacttggaaaagagcgtcttgcgaccggagcccaaataacttggtt 508  Q
    ||||||||| | || ||| || ||||| || ||||  ||||| || |||||||||  |||||||||    
T  7747281 cccggtattccccggatacgtccttgg-aaggagctccttgccactggagcccaagcaacttggtt 7747217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 42770705 - 42770778
Alignment:
Q  398 agaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcgaatatgtacttggaa 471  Q
    |||||||||||||| ||  |||| ||||||  ||| ||||| ||||||||||||||||| ||| || |||||||    
T  42770705 agaggcatgcgcactggccaagcgttgttccccctgagaattgaacccggtatttctcggatacgtccttggaa 42770778  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 343 - 510
Target Start/End: Original strand, 14107357 - 14107523
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||||||||||||||| |  ||||  | | | ||||||  | |||||||  ||||||||| |||| ||| |||| |||||| ||||  ||||||||    
T  14107357 ctttcgcaccggtttccgacccactaataatgggcgactaatccggctcatgcgtagaggcatgtgcactggtcaagcgttgttcctcctgggaatcgaa 14107456  T
Q  443 cccggtatttctcgaatatgtacttggaaaagagcgtcttgcgaccggagcccaaataacttggttta 510  Q
    ||||||||| | |||||| || ||| | || ||||  ||||| || |||||||||| |||||||||||    
T  14107457 cccggtattccccgaatacgt-ctttggaaggagctccttgccactggagcccaaacaacttggttta 14107523  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 508
Target Start/End: Complemental strand, 21898759 - 21898595
Alignment:
Q  343 ctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaa 442  Q
    |||||||||||||||||||| |  ||| |||  || ||||||  | |||||||  |||||||||||||| ||  |||| |||||| ||||  ||||||||    
T  21898759 ctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 21898660  T
Q  443 cccggtatttctcgaatatgtacttggaaaagagcgtcttgcgaccggagcccaaataacttggtt 508  Q
    ||||||||| | || ||| || ||||| || ||||  ||||| || |||||||||  |||||||||    
T  21898659 cccggtattccccggatacgtccttgg-aaggagctccttgccactggagcccaagcaacttggtt 21898595  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 456
Target Start/End: Complemental strand, 365204 - 365137
Alignment:
Q  389 ctcatgcagagaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatttctcg 456  Q
    |||||||  |||||||||||||| | |||||| |||||| ||||  ||||||||||||||||| ||||    
T  365204 ctcatgcgtagaggcatgcgcactgattaagcgttgttcctcctgtgaatcgaacccggtattcctcg 365137  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 29151995 - 29151942
Alignment:
Q  398 agaggcatgcgcacaggttaagcattgttcttcctaagaatcgaacccggtatt 451  Q
    |||||||||||||| ||| || | |||||||||||  |||||||||||||||||    
T  29151995 agaggcatgcgcactggtcaaacgttgttcttcctgggaatcgaacccggtatt 29151942  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 29805438 - 29805507
Alignment:
Q  342 tctttcgcaccggtttccgactcgttaatggtagacaactaatttgactcatgcagagaggcatgcgcac 411  Q
    |||||||||| ||||||||||||  ||| ||||||| | ||||||| |||||||  |||| |||||||||    
T  29805438 tctttcgcactggtttccgactcactaaaggtagacgattaatttggctcatgcgtagagacatgcgcac 29805507  T

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