View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_30 (Length: 455)
Name: NF0908_low_30
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 13050652 - 13050921
Alignment:
| Q |
8 |
tagcataggtagtagttggagacaaac-agaagccccatattattcgaatgtgactattaaccagttggcacattaaccgccctaacgtgattagtcatt |
106 |
Q |
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| T |
13050652 |
tagcacaggtagcagttggagacaaaccagaagccccgtattatttgaatgtgacaattaaccagttgtcacatcaaccaacctaacatgattagtcatt |
13050751 |
T |
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| Q |
107 |
tctccttcttgttgcaacctgcagagttctactcagtaagcattttcaaaacgtttaccgatgcttgcaaacgatcccat-tactaagaccatacagcgc |
205 |
Q |
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| T |
13050752 |
tctccttcttattgccacctgtagagttctgctcagtaagcattttcaaaacgtttaccaatgcttgcaaacgatcccatatgctaagaccatatagcgc |
13050851 |
T |
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| Q |
206 |
ttcaacgagtgac--------ttcaaatccattttctgccacagg-----aggacagatgaaaagtgcat |
262 |
Q |
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| T |
13050852 |
ttcaacaagtgactcctgaaattcaaatccattttctgccacaggatactaggacagatgaaaagtgcat |
13050921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 351 - 454
Target Start/End: Complemental strand, 9014895 - 9014790
Alignment:
| Q |
351 |
actttacaaggcatcatgctaggtccaaatgcctataagtcaaatgcacagatgaatctagtaagcagttgctgaagc--atacacgatagaaagatatt |
448 |
Q |
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| T |
9014895 |
actttacaaggcatcattctaggtccaaatgcctataagtcaagtgcacagatgaatctagtaagcagttgctggagcatatacacgatagaaagatatt |
9014796 |
T |
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| Q |
449 |
cttgaa |
454 |
Q |
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|||||| |
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| T |
9014795 |
cttgaa |
9014790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 365 - 450
Target Start/End: Original strand, 13051690 - 13051775
Alignment:
| Q |
365 |
catgctaggtccaaatgcctataagtcaaatgcacagatgaatctagtaagcagttgctgaagcatacacgatagaaagatattct |
450 |
Q |
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| T |
13051690 |
catgataggtccaaatgcctataagtcaaatgcacagatgaatctagtaagcagttgttggagcatacaagatagaaagacattct |
13051775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 370
Target Start/End: Original strand, 13050953 - 13051062
Alignment:
| Q |
262 |
tatgatattatgtagggttttctagactggcctgaatatgctgcggtatctaggtcttgatgaatggccaccatctatcttcaac-actaactttacaag |
360 |
Q |
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| T |
13050953 |
tatgatataatgaaaggttttttagacagacctgaataggctttggtatcttggtcttaatgaatggccaccatctatcttcaactactgactttacaag |
13051052 |
T |
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| Q |
361 |
gcatcatgct |
370 |
Q |
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| T |
13051053 |
gcagcatgct |
13051062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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