View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_32 (Length: 450)
Name: NF0908_low_32
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 96 - 389
Target Start/End: Original strand, 13032045 - 13032338
Alignment:
| Q |
96 |
tattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggatacaccacgtcaacacaa |
195 |
Q |
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| T |
13032045 |
tattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggatacaccacgtcaacacaa |
13032144 |
T |
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| Q |
196 |
agatcacaaaacataataatgaaaaaatccaattgttaatatcatcgtatcaagaaagataacaaaaaatcaagaatcaatttcctaaaaaatataattt |
295 |
Q |
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| T |
13032145 |
agatcacaaaacataataatgaaaaaatccaattgttaatatcatcgtatcaagaaagataataaaaaatcaagaatcaatttcctaaaaaatataattt |
13032244 |
T |
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| Q |
296 |
caaactgatactcgtatgttacgagagagtagaaattcaaattaaaaaagtgaggatttttcgagagttaatcaaacaaataaaaatttaatcc |
389 |
Q |
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| T |
13032245 |
caaactgatactcgtatgttacgagagagtagaaattcaaattaaaaaagtgaggatttttcgagagttaatcaaacaaataaaaatttaatcc |
13032338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 7418772 - 7418637
Alignment:
| Q |
96 |
tattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggataca--ccacgtcaacac |
193 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
7418772 |
tattgaacagtttcggtcaattaacaaattttatacgaggaggaaatttgatccaaaatcacacacataataattttatggatacaccccacgtcaacac |
7418673 |
T |
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| Q |
194 |
aaagatcacaaaacataataatgaaaaaatccaatt |
229 |
Q |
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| T |
7418672 |
aaagatcacaaaacataatagtgaaaaaatccaatt |
7418637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 221 - 358
Target Start/End: Complemental strand, 7418622 - 7418482
Alignment:
| Q |
221 |
aatccaattgttaatatcatcgtatcaagaaagataacaaaaaatcaagaatcaatttcctaaaaaa---tataatttcaaactgatactcgtatgttac |
317 |
Q |
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||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||| || |
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| T |
7418622 |
aatccaactgttaatatcatcgtatcaagaaatataataaaaaatcaagagtcaatttcctaagaaaaattataatttcaaacagatactcgtatgtcac |
7418523 |
T |
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| Q |
318 |
gagagagtagaaattcaaattaaaaaagtgaggatttttcg |
358 |
Q |
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||||| ||| ||||||||| |||||||||||||| |||||| |
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| T |
7418522 |
gagagggtaaaaattcaaactaaaaaagtgaggaattttcg |
7418482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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