View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_35 (Length: 446)
Name: NF0908_low_35
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 30 - 434
Target Start/End: Original strand, 4995860 - 4996264
Alignment:
| Q |
30 |
tttactttatttgcgaagcaacgcaaccaaatcaacaacgatctgattcactttggaagtacacattgttttagtcttccttctacatgtgtacttctgg |
129 |
Q |
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| T |
4995860 |
tttactttatttgcgaagcaacgcaaccaaatcaacaacgatctgattcactttggaagtacacattgttttagtcttccttctacatgtgtacttctgg |
4995959 |
T |
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| Q |
130 |
attaaaacaatactttgtcattctctaaaagtagtatacttcaaaaatcatgcgtgatgttttaaaaacgtggttcgacaaaatattgttcttcaccaaa |
229 |
Q |
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| T |
4995960 |
attaaaacaatactttgtcattctctaaaagtagtatacttcaaaaatcatgcgcgatgttttaaaaacgtggttcgacaaaatattgttcttcaccaaa |
4996059 |
T |
|
| Q |
230 |
cttggtaaaagaccattcttgtcccccaacatggatcttaaataatccatactaacatcttctaaggttgaggtctgcacgtttctatgttagtcgttga |
329 |
Q |
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| T |
4996060 |
cttggtaaaagaccattcttgtcccccaacatggatcttaaataatccatactaacatcttctaaggttgaggtctgcacgtttctatgttagtcgttga |
4996159 |
T |
|
| Q |
330 |
gattttgttttatcaagattttgataagggaacaagagtttgtttgaacggcacttataatataacttgtgatattggtttctcaattattacccttatt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4996160 |
gattttgttttatcaagattttgataagggaacaagagtttgtttgaacggcacttataatataacttgtgatattggtttctcaattattacccttatt |
4996259 |
T |
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| Q |
430 |
atttt |
434 |
Q |
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| T |
4996260 |
atttt |
4996264 |
T |
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