View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_37 (Length: 444)

Name: NF0908_low_37
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_37
NF0908_low_37
[»] chr5 (1 HSPs)
chr5 (97-364)||(36248245-36248512)
[»] chr3 (4 HSPs)
chr3 (118-199)||(39550518-39550599)
chr3 (122-194)||(39253369-39253441)
chr3 (126-194)||(39552864-39552932)
chr3 (243-322)||(32503429-32503508)
[»] chr1 (2 HSPs)
chr1 (120-197)||(1235705-1235782)
chr1 (122-194)||(39825578-39825650)
[»] chr8 (2 HSPs)
chr8 (122-199)||(14180957-14181034)
chr8 (122-195)||(37877827-37877900)
[»] chr4 (4 HSPs)
chr4 (129-198)||(38487003-38487072)
chr4 (129-198)||(38495092-38495161)
chr4 (129-186)||(47819460-47819517)
chr4 (294-331)||(10031037-10031074)
[»] chr2 (1 HSPs)
chr2 (158-193)||(5872690-5872725)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 97 - 364
Target Start/End: Complemental strand, 36248512 - 36248245
Alignment:
Q  97 aaaaatagaaaaataaacaacacaggacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgtt 196  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36248512 aaaaatagaaaaacaaacaacacaggacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgtt 36248413  T
Q  197 tttgctaccttttt-aacataaatnnnnnnngaggtgtgaaaagtgaaaacttacataagcttcaccaagcttgtaaagaggtaaccaaggaccacttcc 295  Q
    |||||||||||||| |||||||||       ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36248412 tttgctaccttttttaacataaataaaaaa-gaggtgtgaaaagtagaaacttacataagcttcaccaagcttgtaaagaggtaaccaaggaccacttcc 36248314  T
Q  296 accaaaacgagtaacagcttccttaacagactcaaatggcattgacgtatcaacttcagctcttgaact 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36248313 accaaaacgagtaacagcttccttaacagactcaaatggcattgacgtatcaacttcagctcttgaact 36248245  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 39550518 - 39550599
Alignment:
Q  118 acaggacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgttttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39550518 acaggacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgttttt 39550599  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 39253441 - 39253369
Alignment:
Q  122 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 194  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39253441 gactccatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtggagtcg 39253369  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 39552864 - 39552932
Alignment:
Q  126 tcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39552864 tcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgacccccagtgaagtcg 39552932  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 32503429 - 32503508
Alignment:
Q  243 aaacttacataagcttcaccaagcttgtaaagaggtaaccaaggaccacttccaccaaaacgagtaacagcttccttaac 322  Q
    |||| |||| ||||||| |||||| |||||||||| | |||||| ||||||||||| |||||||| || |||||||||||    
T  32503429 aaacatacaaaagcttctccaagcctgtaaagaggaatccaaggtccacttccaccgaaacgagtgacggcttccttaac 32503508  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 1235782 - 1235705
Alignment:
Q  120 aggacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgttt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235782 aggacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgttt 1235705  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 39825650 - 39825578
Alignment:
Q  122 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39825650 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 39825578  T

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Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 14180957 - 14181034
Alignment:
Q  122 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgttttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14180957 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgctttt 14181034  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 37877827 - 37877900
Alignment:
Q  122 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37877827 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgt 37877900  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 38487003 - 38487072
Alignment:
Q  129 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgtttt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  38487003 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagcggagtcgtttt 38487072  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 38495092 - 38495161
Alignment:
Q  129 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcgtttt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  38495092 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagcggagtcgtttt 38495161  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 47819517 - 47819460
Alignment:
Q  129 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccag 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47819517 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccag 47819460  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 10031037 - 10031074
Alignment:
Q  294 ccaccaaaacgagtaacagcttccttaacagactcaaa 331  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  10031037 ccaccaaaccgagtaacagcttctttaacagactcaaa 10031074  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 5872690 - 5872725
Alignment:
Q  158 gaaccagagattctgggttcgatccccagtgaagtc 193  Q
    ||||||||||||||||||||| ||||||||||||||    
T  5872690 gaaccagagattctgggttcggtccccagtgaagtc 5872725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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