View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_4 (Length: 656)
Name: NF0908_low_4
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 30 - 646
Target Start/End: Original strand, 53044922 - 53045538
Alignment:
| Q |
30 |
tccagttggtaaggtattgtcctttacagtccaaaactaaatcaatggaaactaaaggggccataataagactatgttagagattttttctagcgatcaa |
129 |
Q |
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| T |
53044922 |
tccagttggtaaggtattgtcctttacagtccaaaactaaatcaatggaaactaaaggggccataataagactatgttagagattttttctagcgattaa |
53045021 |
T |
|
| Q |
130 |
gttaggagccagtcaactgtaaaatgatttatttctcctactagtgataggtatataaccttatttaaggattgaaaaagatattctgagtagcgtcctt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
53045022 |
gttaggagccagtcaactgtaaaatgatttatttctcctactagtgataggtatataacctcatttaaggattgaaaaagctattctgagtagcgtcctt |
53045121 |
T |
|
| Q |
230 |
ttggcttggtattccaattaagtttctcacattctacaacataaggatttaaggattcaaaatctcttgagaaatttcaaaagacatgttctgtacttat |
329 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53045122 |
ttggcttggtattccaattaattttctcacattctacaacataaggatttaaggattcaaaatctcttgagaaatttcaaaagacatgttctgtacttat |
53045221 |
T |
|
| Q |
330 |
ccttacttggatggattgattgtgattttaataatagacttcatttccaacattttcttttgcttaattgtttatgttgttgacaagtgttataccataa |
429 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53045222 |
ccttacttggatgaattgattgtgattttaataatagacttcatttccaacattttcttttgcttaattgtttatgttgttgacaagtgttataccataa |
53045321 |
T |
|
| Q |
430 |
ctcctcaggtttggcgtgtgaatggtcaagnnnnnnntcttctcgcagccactgaccagtcaaaattttatagcggagattgctacatctttcagtattc |
529 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53045322 |
cttctcaggtttggcgtgtgaatggtcaagaaaaaaatcttctcgcagccactgaccagtcaaaattttatagcggagattgctacatctttcagtattc |
53045421 |
T |
|
| Q |
530 |
atatccaggagaagatagggaggagcatcttataggaacatggattggaaagaacagtgttgaggtgaaagatttatagtannnnnnnctagttctttct |
629 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
53045422 |
atatccaggagaagatagggaggagcatcttataggaacatggattggaaagaacagtgttgaggtgaaagatttatagtatttttttccagttctttct |
53045521 |
T |
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| Q |
630 |
gaatgtgtgtgtctgtg |
646 |
Q |
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||||||||||||||||| |
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| T |
53045522 |
gaatgtgtgtgtctgtg |
53045538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 467 - 604
Target Start/End: Complemental strand, 15962626 - 15962489
Alignment:
| Q |
467 |
tcttctcgcagccactgaccagtcaaaattttatagcggagattgctacatctttcagtattcatatccaggagaagatagggaggagcatcttatagga |
566 |
Q |
| |
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||||||| |||| |||| || |||||||||||||| |||||||||| ||||||||| ||||| ||||| |||||||||| ||| || ||| || ||| |
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| T |
15962626 |
tcttctcccagcttctgatcaatcaaaattttatagtggagattgcttcatctttcaatattcgtatcctggagaagataaggacgactgtctcattgga |
15962527 |
T |
|
| Q |
567 |
acatggattggaaagaacagtgttgaggtgaaagattt |
604 |
Q |
| |
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|| ||||| ||||||||||||||||||||||||||||| |
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| T |
15962526 |
acgtggataggaaagaacagtgttgaggtgaaagattt |
15962489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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