View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_40 (Length: 433)
Name: NF0908_low_40
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_40 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 63 - 433
Target Start/End: Original strand, 35631423 - 35631791
Alignment:
| Q |
63 |
ttattagattaaattaataaaaagttctccaaacctgtcactgtttcaagtaaacttggaggagccatatctacaaaacaacaacaaaacaatgaagtga |
162 |
Q |
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| T |
35631423 |
ttattagattaaattaataaaaagtt-tccaaacctgtcgctgtttcaagtaaacttggaggagccatatctacaaaattcaaagaaaacaatgaagtga |
35631521 |
T |
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| Q |
163 |
ataattgagatgatgaagatgaatatataaggtgcgatgaatggaagtgacacgtggcatagcttcgttttggacacaaaaacagagacaagtcacagga |
262 |
Q |
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| T |
35631522 |
ataattgagatgatgaagatgaatatataaggtgcaatgaatggaagtgacacgtggcatagcttcgttttggacacaaaa-cagagacaagtcacagga |
35631620 |
T |
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| Q |
263 |
attgggaggaacattacgcatgcatgacgatacgcgagtagtgacggaatcaaggtttttgtttttgccttcatcttggtcttgttacgtttcttaaaat |
362 |
Q |
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| T |
35631621 |
attgggaggaacatgacgcatgcatgacaacacgtgagtagtgaaggaatcaaggtttttgtttttgccttcatcttggtcttgttacgtttcttaaaat |
35631720 |
T |
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| Q |
363 |
tttgtaatgtagttcttttataagtaataattgaaaccnnnnnnnggtctcatcctaattaagattgatta |
433 |
Q |
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| T |
35631721 |
tttgtaatgttgttcttttataagtaaaaattgaaacatttttttggtctcatcctaattaagattgatta |
35631791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 35631371 - 35631406
Alignment:
| Q |
10 |
aagaatataggtcctgaattgaacaattcaaccgtt |
45 |
Q |
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| T |
35631371 |
aagaatataggtcctgaattgaacaattcaaccgtt |
35631406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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