View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_41 (Length: 424)
Name: NF0908_low_41
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 16193628 - 16193378
Alignment:
| Q |
9 |
caacaatatcatcaccattcaaatattccttaagaaacccttccaccataactctaggcacacaagtgaagaaaactctacaccctactgaaaccaaaac |
108 |
Q |
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| T |
16193628 |
caacaatatcatcaccattcaaatattccttaagaaacccttccaccataactctaggcacacaagtgaagaaaactctacaccctactgagaccaaaac |
16193529 |
T |
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| Q |
109 |
ctcataagccttaaggttaagattctccatgtaaaactttggtaaaactacccttgcaatcatttccatgttctttattttcagtccacaaaaagtgatg |
208 |
Q |
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| T |
16193528 |
ctgataagctttaaggttaaggttctccatgtaaaactttggtaaaactacccttgcaatcatttccatgtccttaattttaagtccacaaaaagtgatg |
16193429 |
T |
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| Q |
209 |
aagatcatgactttaagtttatgttcatagctcaaaaagcataatatagga |
259 |
Q |
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| T |
16193428 |
aagatcatgactttaagtttatgttcatagctcaaaaagcataatatagga |
16193378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 48666466 - 48666398
Alignment:
| Q |
259 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg |
327 |
Q |
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| T |
48666466 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg |
48666398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 48628223 - 48628155
Alignment:
| Q |
259 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg |
327 |
Q |
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| T |
48628223 |
agcagaggagttgaagaaaaatgcaatgaagtggaagaaggaggcagaggaagcagtggccgttggtgg |
48628155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 48584640 - 48584572
Alignment:
| Q |
259 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg |
327 |
Q |
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| T |
48584640 |
agcagagaagttgaagcaaaatgcaaacaagtggaagaagaaggcggaggaagctttggccgttggtgg |
48584572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 48655890 - 48655834
Alignment:
| Q |
259 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagt |
315 |
Q |
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| T |
48655890 |
agcagaggagttgaagaaaaatgcaatcaagtggaagaaggcagcggaggatgcagt |
48655834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 39976901 - 39977041
Alignment:
| Q |
47 |
ccttccaccataactctaggcacacaagtgaagaaaactctacaccctactgaaaccaaaacctcataagccttaaggttaagattctccatgtaaaact |
146 |
Q |
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||||| ||||||||||||||||||| |||| | |||| || |||| ||||| | | || ||||||| | | ||| ||||||||||| | ||||||| |
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| T |
39976901 |
ccttctaccataactctaggcacacttgtgataacaactttagacccagctgaagcaagaatctcataaacttgaagattaagattctctaaataaaact |
39977000 |
T |
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| Q |
147 |
ttggtaaaactacccttgcaatcatttccatgttctttatt |
187 |
Q |
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|||||||||| |||||| || ||||||||| ||||||| |
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| T |
39977001 |
ttggtaaaacagcccttgaaacattttccatgtcctttatt |
39977041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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