View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_42 (Length: 423)
Name: NF0908_low_42
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 11530604 - 11530461
Alignment:
| Q |
93 |
ttattgctgtctcgattaaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaattt |
192 |
Q |
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| T |
11530604 |
ttattgctgtctcgattaaatcctcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaattt |
11530505 |
T |
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| Q |
193 |
atcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
236 |
Q |
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| T |
11530504 |
atcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
11530461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 11556101 - 11555958
Alignment:
| Q |
93 |
ttattgctgtctcgattaaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaattt |
192 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556101 |
ttattgctgtctcgattaaatcgtcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaattt |
11556002 |
T |
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| Q |
193 |
atcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
236 |
Q |
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| T |
11556001 |
atcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
11555958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 320 - 410
Target Start/End: Complemental strand, 11555891 - 11555801
Alignment:
| Q |
320 |
caagtgactgtaaattatggtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatttaaatttcattgttc |
410 |
Q |
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| T |
11555891 |
caagtgactgtaaattatagtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttc |
11555801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 11530213 - 11530155
Alignment:
| Q |
352 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatttaaatttcattgttc |
410 |
Q |
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| T |
11530213 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttc |
11530155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 11556559 - 11556521
Alignment:
| Q |
102 |
tctcgattaaatcctcatacaaggtgttggaatgtttgt |
140 |
Q |
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| T |
11556559 |
tctcgattaaatcgtcatacaaggtgttggaaggtttgt |
11556521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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