View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_43 (Length: 421)
Name: NF0908_low_43
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 29 - 402
Target Start/End: Original strand, 31114147 - 31114520
Alignment:
| Q |
29 |
atgaacatcatccaaattttgatttatgtaagcttgtgttacattaaacaaatttcatgcattattgaatacatacgacgctgatagaaaacaacaaaaa |
128 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31114147 |
atgaacatcatccaaattttgattaatgtaagcttgtgttacattaaacaaatttcatgcattattgaatacatacgacgctgatagaaaacaacaaaaa |
31114246 |
T |
|
| Q |
129 |
ttgagagaaaatatatcgtgtaggaggaacttcgcaaagctctatcattcttcttccacttcctcaagttcaaacaaacaccactgacacggtggccgct |
228 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
31114247 |
ttgggagaaaatatatcgtgtaggaggaacttcgcaaagctctatcattcttcttccacttcctcaagttcaaacaaacgccactgacacagtggccgct |
31114346 |
T |
|
| Q |
229 |
gacagtagatactctcaacaacttctcccacccaaagcttcaaacaaacaggaaccaatggttcgttaaaaaattggcgacttgttttgcaagtaagagt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31114347 |
gacagtagatactctcaacaacttctcccacccaaagcttcaaacaaacaggaacaaatggttcgttaaaaaattggtgacttgttttgcaagtaagagt |
31114446 |
T |
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| Q |
329 |
tatattatgagtacaaaaaagcatgcatcatcaacaacttcctagacgagatggttacccacattctgtctttt |
402 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31114447 |
tatattatgagtacataaaagcatgcatcatcaacaacttcctagacgagatggttacccacattctgtctttt |
31114520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 31088287 - 31088340
Alignment:
| Q |
229 |
gacagtagatactctcaacaacttctcccacccaaagcttcaaacaaacaggaa |
282 |
Q |
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||||||||| |||||| ||||||||||||||| ||||||||||||||| |||| |
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| T |
31088287 |
gacagtagaaactctcgacaacttctcccaccgcaagcttcaaacaaacgggaa |
31088340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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