View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_44 (Length: 419)
Name: NF0908_low_44
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 30877956 - 30878373
Alignment:
| Q |
1 |
agttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaacaagtgacagtagatg---atgatgatggctaaggaagtgaaggaactgttatg |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30877956 |
agttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaacaagtgacagtagatgatgatgatgatggctaaggaagtgaaggaactgttatg |
30878055 |
T |
|
| Q |
98 |
gaatacacacctttttatattggagaagttcttgtaccaataagatgtaaggtgtggccttggtactttctttacatgtaaaatgttgaaaaatttgctt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30878056 |
gaatacacacctttttatattggagaagttcttgtaccaataagatgtaaggtgtggccttggtactttctttacttgtaaaatgttgaaaaatttgctt |
30878155 |
T |
|
| Q |
198 |
gatttcaatagtttatgcatactacaatcatatagaatcaaatattaataataatttttaagtttagttcaataaaatcgtcacacaatccactataaat |
297 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30878156 |
gatttcaatagtttatgcatactagaatcatatagaatcaaatattaataataatttttaattttagttcaataaaatcgtcacacaatccactataaat |
30878255 |
T |
|
| Q |
298 |
ccatgtgagaggatcatatccatactaaaatcatttaaattatccttaaacttctcta-------tattatattttactagtatatgaaaaaatataagt |
390 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30878256 |
ccaggtgagaggatcatatccatactaaaatcatttaaattatccttaaacttctctattaaacgtattatattttactagtatatgaaaaaatataagt |
30878355 |
T |
|
| Q |
391 |
gagtcgagtcacaggttc |
408 |
Q |
| |
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||||||||| || ||||| |
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| T |
30878356 |
gagtcgagttacgggttc |
30878373 |
T |
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