View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_45 (Length: 418)

Name: NF0908_low_45
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_45
NF0908_low_45
[»] chr6 (3 HSPs)
chr6 (203-397)||(31114472-31114667)
chr6 (77-135)||(31114681-31114739)
chr6 (176-288)||(31088499-31088611)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 203 - 397
Target Start/End: Complemental strand, 31114667 - 31114472
Alignment:
Q  203 gtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggatc 302  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31114667 gtccatgaatcgaccaaagtgaacccagttcactgtgtttctgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggacc 31114568  T
Q  303 cacctctttgaatggacattggttct-aaagcttatttgattgggagaaaagacagaatgtgggtaaccatctcgtctaggaagttgttgatgatg 397  Q
    || ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31114567 caactcttagaaaggacattggttctaaaagcttatttgattgggagaaaagacagaatgtgggtaaccatctcgtctaggaagttgttgatgatg 31114472  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 31114739 - 31114681
Alignment:
Q  77 atggacatcatccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat 135  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31114739 atggacatcaaccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat 31114681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 288
Target Start/End: Complemental strand, 31088611 - 31088499
Alignment:
Q  176 ttgagagtgggggttgaacataattgcgtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagata 275  Q
    ||||||||| ||||||||||||||||  |||| |||||  | |||||||||||| ||| |||||||| |  |||| |||||| ||||||||| || || |    
T  31088611 ttgagagtgtgggttgaacataattgtatccacgaatcaacgaaagtgaacccacttctctgtgtttctttgatagaagcttatatcatcaaagcggaca 31088512  T
Q  276 atggagagtgagt 288  Q
    |  ||||||||||    
T  31088511 acagagagtgagt 31088499  T

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