View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_48 (Length: 394)
Name: NF0908_low_48
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 383
Target Start/End: Original strand, 47439681 - 47440032
Alignment:
| Q |
29 |
agatataaggagtttgaggtgttttgttcaaattcaaataaatgagtaaatattaatctaatttaataactaacatttgtcattttaaacaaaagggnnn |
128 |
Q |
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| T |
47439681 |
agatataaggagtttgaggtgttttgttcaaattcaaacaaatgaataaatattaatctaatttaataattaacattcgtcattttaaacaaaagggaaa |
47439780 |
T |
|
| Q |
129 |
nnnnnngtgagcctctacttgctcatcataaattaaagaaaaatcttcgcaataatatatggttgtcaatcttcatcgaagtttgtttctctaaaaatat |
228 |
Q |
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| T |
47439781 |
aaaaaagtgagcctctactcgctcatcgtaaattaaagaaaaatctttgcaacaacatatggttgccaattcctattgaagtttgtttctctaaaaatat |
47439880 |
T |
|
| Q |
229 |
gtttcacaagtatatctcaatccataggaaaaagataaaaatatttaaaaagtgttataatcattttcgtttcaattctctatttaacacttactttttt |
328 |
Q |
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|||||||| | || ||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||| ||| ||| ||||||||||||||||| |
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| T |
47439881 |
gtttcacaggcatgtcttaatccatacgaaaaagataaaaatatttgaaaagtattataatcattttcgttttaatcctc---ttaacacttactttttt |
47439977 |
T |
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| Q |
329 |
attgataaattttttataaacatcacacgttaaaaatttatctcacgttcttcat |
383 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47439978 |
attgataaaatatttataaacatcacacgttaaaaatttatctcacgttcttcat |
47440032 |
T |
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