View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0908_low_51 (Length: 385)
Name: NF0908_low_51
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_51 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 117 - 364
Target Start/End: Original strand, 27083190 - 27083437
Alignment:
| Q |
117 |
cgattgtgttgaatagtgttgaagttgaaatgacggtagtagttgatgaaattctcagtgttgatgtaattcatttctgaattgacacttctgttactgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27083190 |
cgattgtgttgaatagtgttgaagttgaaatgacggtagtagttgatgaaattctcagtgttgatgtaattcatttctgaattgacacttctgttactgt |
27083289 |
T |
|
| Q |
217 |
ttcagttgaaaattgaagtgatatgaacgttttgttgactttgatttgctagaggttgaatcgttttagtatttagattgcatgaatcatatgagcttca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27083290 |
ttcagttgaaaattgaagtgatatgaacgttttgttgactttgatttgttagaggttgaatcgttttagtatttagattgcatgaatcgtatgagcttca |
27083389 |
T |
|
| Q |
317 |
aatgaaattgttaatctcttttctgtgtttggttcataggtttgatga |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27083390 |
aatgaaattgttaatctcttttctgtgtttggttcataggtttgatga |
27083437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 324
Target Start/End: Original strand, 27083640 - 27083759
Alignment:
| Q |
212 |
actgtttcagttgaaaattgaagtgatatgaacgttttgttgacttt-------gatttgctagaggttgaatcgttttagtatttagattgcatgaatc |
304 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||||||||||||||| |||||| | || ||||||| |||||||||||||||||||||||||| |
|
|
| T |
27083640 |
actgttacggttgaaaattgcagtgatatgaacgttttgttgactttaatttttgatttgttcgaagttgaattgttttagtatttagattgcatgaatc |
27083739 |
T |
|
| Q |
305 |
atatgagcttcaaatgaaat |
324 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27083740 |
gtatgagcttcaaatgaaat |
27083759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 27083846 - 27083888
Alignment:
| Q |
221 |
gttgaaaattgaagtgatatgaacgttttgttgactttgattt |
263 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27083846 |
gttgaaaattgaagtgatatgaacattttgttgactttgattt |
27083888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 27083562 - 27083630
Alignment:
| Q |
118 |
gattgtgttgaatagtgttgaagttgaaatgacggtagtagttgatgaaattctcagtgttgatgtaatt |
187 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | |||||||||| ||||| ||||||||| |||| |
|
|
| T |
27083562 |
gattgtgttgaatggtgttgaagttgaaatgacggcaacagttgatgaagttctc-gtgttgatgaaatt |
27083630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27083074 - 27083109
Alignment:
| Q |
1 |
tcggtaatttgatagtattttacggttattgttgaa |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
27083074 |
tcggtaatttgatagtattttacggttattgttgaa |
27083109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 714 times since January 2019
Visitors: 6696