View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_53 (Length: 379)
Name: NF0908_low_53
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 39 - 309
Target Start/End: Complemental strand, 31595000 - 31594737
Alignment:
| Q |
39 |
agttttagagtaaacatcacaaattctccaagataattttaaaaaacgagagacaatagattctcctacgttataaaattggacagttgacatggttaat |
138 |
Q |
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| T |
31595000 |
agttttagagtaaacattacaaattctccaagataattttaaaaaacgaga---------ttctcctacgttataaaattggacagttgacatggttaat |
31594910 |
T |
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| Q |
139 |
ttcatccatgttttgttgaccatttatattgatagctacatattatatacatt-ttttggatcttcttcacttcattcaaatccacactgtttactatat |
237 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31594909 |
ttcatccatgttttgttgaccatttatagtgatagctacatattatatacatttttttggatcttcttgacttcattcaaatccacactgtttactatat |
31594810 |
T |
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| Q |
238 |
tc-tttagtcaaggtgatgatcgtatatagtgtgaacatgatcatctggatttatttaaatcatggtaaactt |
309 |
Q |
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| T |
31594809 |
tcttttagtcaaggtgatgatcgaatatagtgtgaacatgatcctctggatttatttaaatcatggtaaactt |
31594737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 309
Target Start/End: Complemental strand, 31578381 - 31578287
Alignment:
| Q |
216 |
aaatccacactgtttactatattctttagtcaa-ggtgatgatcgtatata--gtgtgaacatgatcatctggatttatttaaatcatggtaaactt |
309 |
Q |
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|||||||||| ||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31578381 |
aaatccacaccgtttactat--tctttagtcaaaggtgatgaccgtatatatagtgtgaacatgatcatctggatttattcaaatcatggtaaactt |
31578287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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