View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_55 (Length: 375)
Name: NF0908_low_55
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 70 - 279
Target Start/End: Original strand, 29990697 - 29990906
Alignment:
| Q |
70 |
aggagcacagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactgtgcactttgaaacttctt |
169 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29990697 |
aggagcagagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactctgcactttgaaacttctt |
29990796 |
T |
|
| Q |
170 |
agtgcttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtga |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29990797 |
agtgcttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtga |
29990896 |
T |
|
| Q |
270 |
atgttagtga |
279 |
Q |
| |
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|||| ||||| |
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| T |
29990897 |
atgtcagtga |
29990906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 89 - 279
Target Start/End: Original strand, 29999420 - 29999610
Alignment:
| Q |
89 |
tatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactgtgcactttgaaacttcttagtgcttcaaaagttgaga |
188 |
Q |
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||||||| ||||||||| | |||||| |||| | ||||||||||| ||| | | |||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
29999420 |
tatggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaacttcttagtgcttcaaaagttgaga |
29999519 |
T |
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| Q |
189 |
agtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgttagtga |
279 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29999520 |
agtcgggtcctattagaaaagaggagttgggtgttttggttaacactttgaagaaagcttctttggtaggtgaggttgtgaatgttagtga |
29999610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 81 - 279
Target Start/End: Complemental strand, 30045304 - 30045106
Alignment:
| Q |
81 |
tcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactgtgcactttgaaacttcttagtgcttcaaa |
180 |
Q |
| |
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|||| |||||||||| ||||||| |||| |||| | |||| | ||||||||||||||||| | |||| | ||||||||||||||||||||||||||||| |
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| T |
30045304 |
tcatgtcttatggttccaaagggatggctttttgtgagtatggtccttattggcgtagtgtgaggaaattttgcactttgaaacttcttagtgcttcaaa |
30045205 |
T |
|
| Q |
181 |
agttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgttagtga |
279 |
Q |
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|||||||| ||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |
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| T |
30045204 |
agttgagatgtctggtcctattagaaaagaggagttgagtattttggttaacactttgaagaaagctgctttggttggtgaggttgtgaatgttagtga |
30045106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 125 - 279
Target Start/End: Complemental strand, 30071090 - 30070936
Alignment:
| Q |
125 |
ccttattggcgtagtgtaaagaaactgtgcactttgaaacttcttagtgcttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattt |
224 |
Q |
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||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||| |
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| T |
30071090 |
ccttattggcgtagtgtgaggaaattttgcactttgaaacttcttagtgcttcaaaagttgagatgtctggtcctattagaaaagaggagttgagtattt |
30070991 |
T |
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| Q |
225 |
tggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgttagtga |
279 |
Q |
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|||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |
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| T |
30070990 |
tggttaacactttgaagaaagctgctttggttggtgaggttgtgaatgttagtga |
30070936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 70 - 279
Target Start/End: Original strand, 29943866 - 29944075
Alignment:
| Q |
70 |
aggagcacagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactgtgcactttgaaacttctt |
169 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| || |||| ||||||||| |
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| T |
29943866 |
aggagcacagatcatgtcttatggttgcaaagggttggcgttttctaagtacgactcttattggcgtagtgtgagaaaactttgtacttcaaaacttctt |
29943965 |
T |
|
| Q |
170 |
agtgcttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtga |
269 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||| | ||| |||||| | |||||||||| ||||| | |||||| || ||| ||||||||||||| |
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| T |
29943966 |
agtgcttcgaaagttgagatgtttggtcctattaggaaggagaagttggatgttttggttaaatctttggagaaagctgctctggagggtgaggttgtga |
29944065 |
T |
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| Q |
270 |
atgttagtga |
279 |
Q |
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|||||||||| |
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| T |
29944066 |
atgttagtga |
29944075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 88 - 279
Target Start/End: Original strand, 29963110 - 29963301
Alignment:
| Q |
88 |
ttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactgtgcactttgaaacttcttagtgcttcaaaagttgag |
187 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29963110 |
ttatggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaactttgcactttgaaacttcttagtgcttcaaaagttgag |
29963209 |
T |
|
| Q |
188 |
aagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgttagtga |
279 |
Q |
| |
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| || ||||||||||| | ||||||||| | |||||||||| | || | |||| | |||||||||||||||||||||||||||||| |
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| T |
29963210 |
atgtttggtcctattaggaagaaggagttggatgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtga |
29963301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 88 - 279
Target Start/End: Complemental strand, 30011688 - 30011497
Alignment:
| Q |
88 |
ttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactgtgcactttgaaacttcttagtgcttcaaaagttgag |
187 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30011688 |
ttatggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaactttgcactttgaaacttcttagtgcttcaaaagttgag |
30011589 |
T |
|
| Q |
188 |
aagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgttagtga |
279 |
Q |
| |
|
| || ||||||||||| | ||||||||| | |||||||||| | || | |||| | |||||||||||||||||||||||||||||| |
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| T |
30011588 |
atgtttggtcctattaggaagaaggagttggatgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtga |
30011497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 89 - 279
Target Start/End: Original strand, 29952006 - 29952196
Alignment:
| Q |
89 |
tatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactgtgcactttgaaacttcttagtgcttcaaaagttgaga |
188 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| | ||||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
29952006 |
tatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcaaaagttgaga |
29952105 |
T |
|
| Q |
189 |
agtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgttagtga |
279 |
Q |
| |
|
|| ||| ||||||| | || |||||| | ||||| |||| | ||| | |||||| ||||||| |||||||||||||||||||||| |
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|
| T |
29952106 |
tgtttggttctattaggaaggaaaagttggatgttttgattaagtcattggagaaagctgctttggtgagtgaggttgtgaatgttagtga |
29952196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 279
Target Start/End: Original strand, 30005850 - 30006048
Alignment:
| Q |
81 |
tcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactgtgcactttgaaacttcttagtgcttcaaa |
180 |
Q |
| |
|
|||| |||||||||| ||||||| |||| |||||| |||| | ||||||||||||||||| | |||| | ||||||||||||||| ||||||||||||| |
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|
| T |
30005850 |
tcatgtcttatggttccaaagggatggctttttctgagtatggtccttattggcgtagtgtgaggaaattttgcactttgaaactttttagtgcttcaaa |
30005949 |
T |
|
| Q |
181 |
agttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgttagtga |
279 |
Q |
| |
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|||||||| || ||||||||||| | ||| |||||| | ||||||||| ||||| | |||||| | |||| ||||||||||||||||||||||| |
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| T |
30005950 |
agttgagatgtttggtcctattaggaaggagaagttggatgttttggttatatctttggagaaagctgccttggagggtgaggttgtgaatgttagtga |
30006048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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