View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_57 (Length: 369)

Name: NF0908_low_57
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_57
NF0908_low_57
[»] chr2 (7 HSPs)
chr2 (89-362)||(38711059-38711332)
chr2 (298-369)||(38711178-38711249)
chr2 (172-338)||(38710945-38711123)
chr2 (280-369)||(38710983-38711072)
chr2 (172-251)||(38710837-38710916)
chr2 (176-267)||(38710890-38710981)
chr2 (297-369)||(38710845-38710917)
[»] chr8 (3 HSPs)
chr8 (172-264)||(39704971-39705063)
chr8 (207-265)||(39704937-39704995)
chr8 (280-369)||(39704953-39705042)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 89 - 362
Target Start/End: Complemental strand, 38711332 - 38711059
Alignment:
Q  89 catcatcatcacctttcgttgcaccggtacactccccagcaacgtctccagcatggattgctccgacaccaagtgctactagatggaatgctccttcacc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38711332 catcatcatcacctttcgttgcaccggtacactccccagcaacgtctccagcatggattgctccgacaccaagtgctactagatggaatgctccttcacc 38711233  T
Q  189 aagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcgccaagtgctaccagcaagactgctccaacacaa 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38711232 aagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcaccaagtgctaccagcaagactgctccaacacaa 38711133  T
Q  289 tcaccgatttggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacc 362  Q
    |||||| ||||||||||||||||||||||||||| ||| |||| ||||||  ||||||||||| ||||||||||    
T  38711132 tcaccggtttggaatgctccttcaccaagtgctaccggctggactgctcccgcacactccccaacacaatcacc 38711059  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 298 - 369
Target Start/End: Complemental strand, 38711249 - 38711178
Alignment:
Q  298 tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttgg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38711249 tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttgg 38711178  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 338
Target Start/End: Complemental strand, 38711123 - 38710945
Alignment:
Q  172 tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcgccaagtgctaccagca 271  Q
    ||||||||||||||||||||||||| ||| |||| ||||||  ||||||||||| ||||||||||  ||||||  ||| |||| |||||||||||| |      
T  38711123 tggaatgctccttcaccaagtgctaccggctggactgctcccgcacactccccaacacaatcaccgacttggagtgcttcttcaccaagtgctaccggtt 38711024  T
Q  272 agact------------gctccaacacaatcaccgatttggaatgctccttcaccaagtgctatcggttggaatgctcc 338  Q
     ||||             |||||||||||||||||  |||| ||||||||||||||||||||| |||||||| ||||||    
T  38711023 ggactactccgacacactctccaacacaatcaccggcttggcatgctccttcaccaagtgctaccggttggactgctcc 38710945  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 38711072 - 38710983
Alignment:
Q  280 ccaacacaatcaccgatttggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttgg 369  Q
    |||||||||||||||| ||||| |||| ||||||||||||||| |||||||| | |||| |||||||| ||| |||||||||| ||||||    
T  38711072 ccaacacaatcaccgacttggagtgcttcttcaccaagtgctaccggttggactactccgacacactctccaacacaatcaccggcttgg 38710983  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 38710916 - 38710837
Alignment:
Q  172 tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctcc 251  Q
    |||||||||||  |||||||||||| |||||||| ||| || ||||| || ||| |||||||| | |||||||| |||||    
T  38710916 tggaatgctccgacaccaagtgctaccggttggactgcccctacacattctccagcacaatcatcagcttggaatgctcc 38710837  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 38710981 - 38710890
Alignment:
Q  176 atgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcgccaagtgctacc 267  Q
    ||||||||||||||||||||| |||||||| ||||||  |||| || ||| || ||||| | | |||||| |||||  | ||||||||||||    
T  38710981 atgctccttcaccaagtgctaccggttggactgctcctgcacattctccaacaaaatcatcgggttggaatgctccgacaccaagtgctacc 38710890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 38710917 - 38710845
Alignment:
Q  297 ttggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttgg 369  Q
    ||||||||||||  |||||||||||| |||||||| ||| || ||||| || ||| |||||||| | ||||||    
T  38710917 ttggaatgctccgacaccaagtgctaccggttggactgcccctacacattctccagcacaatcatcagcttgg 38710845  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 39704971 - 39705063
Alignment:
Q  172 tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcgccaagtgct 264  Q
    ||||||||||| |||||||||||||| |  |||| ||||||  |||||||||||  |||||| || |||||||| ||||| ||| ||||||||    
T  39704971 tggaatgctccctcaccaagtgctattgtctggactgctccggcacactccccagtacaatcgccagcttggaatgctccctcgtcaagtgct 39705063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 39704937 - 39704995
Alignment:
Q  207 tgctccaacacactccccatcacaatcacctgcttggaaggctccttcgccaagtgcta 265  Q
    ||||||||||| ||||||| ||||| |||| |||||||| ||||| || ||||||||||    
T  39704937 tgctccaacacgctccccaacacaaccaccagcttggaatgctccctcaccaagtgcta 39704995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 39704953 - 39705042
Alignment:
Q  280 ccaacacaatcaccgatttggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttgg 369  Q
    ||||||||| ||||   |||||||||||| |||||||||||||| |  |||| ||||||  |||||||||||  |||||| || ||||||    
T  39704953 ccaacacaaccaccagcttggaatgctccctcaccaagtgctattgtctggactgctccggcacactccccagtacaatcgccagcttgg 39705042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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