View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_58 (Length: 368)
Name: NF0908_low_58
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 30 - 356
Target Start/End: Original strand, 53116305 - 53116631
Alignment:
| Q |
30 |
gttattgtacataacgcattatatatgcgattacaaatcatattatagataaataagttgcattttccatggtgattaaggaagtgatgaattcaactca |
129 |
Q |
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| T |
53116305 |
gttattgtacgtaacgcattatatatgcgattgcaaattatattgtagataaataagttgcattttccatggtgattaaggaagtgatgaattcaactca |
53116404 |
T |
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| Q |
130 |
attcaagggcacttgcgtctgcctccatgggtggtttggttggcatagcagggacacatttcttggttaccggaggttcccggcggcacgcagttgcacc |
229 |
Q |
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| T |
53116405 |
attcaagggcacttgcgtctgcctccatgggtggtttggttggcatagcagggacacatttcttggttaccggaagttcccggcggcacgcagttgcacc |
53116504 |
T |
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| Q |
230 |
gactgcagcaagttccacatgccctgtggcagaggtgcggccgtgatgataaacggcacctagcagcacatgctccattgcaatctgaaatttatatcat |
329 |
Q |
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| T |
53116505 |
gactgcagcaagttccacatgccctgtggcagaggtgcggccgtgatgataaacggcacctagcagcacatgctccattgcaatctgaaatttatatcat |
53116604 |
T |
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| Q |
330 |
aattatcatctacttcacacacatatt |
356 |
Q |
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| T |
53116605 |
aattatcatctacttcacacacatatt |
53116631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 179 - 356
Target Start/End: Original strand, 53103178 - 53103355
Alignment:
| Q |
179 |
agggacacatttcttggttaccggaggttcccggcggcacgcagttgcaccgactgcagcaagttccacatgccctgtggcagaggtgcggccgtgatga |
278 |
Q |
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| T |
53103178 |
agggacacatttcttggttaccggaagttcccagtggcacgcagttgcagcgactgcagcaagttccacatgccctgtgaccgaggcgctgccgtgatga |
53103277 |
T |
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| Q |
279 |
taaacggcacctagcagcacatgctccattgcaatctgaaatttatatcataattatcatctacttcacacacatatt |
356 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||| |
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| T |
53103278 |
taaacagcacctagcagcacatgctccattgcaatctgaaatttatatcaaatttatcatctactacacacagatatt |
53103355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 53103073 - 53103181
Alignment:
| Q |
30 |
gttattgtacataacgcattatatatgcgattacaaatcatattatagataaataagttgcattttccatggtgattaaggaagtgatgaattcaactca |
129 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53103073 |
gttattgtacataacgcattatatatgcgattacaaatcatattctagataaataagttgcattttccatggtgattaaggaagtgatgaattcaactca |
53103172 |
T |
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| Q |
130 |
attcaaggg |
138 |
Q |
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||||||||| |
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| T |
53103173 |
attcaaggg |
53103181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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