View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_6 (Length: 635)
Name: NF0908_low_6
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 238 - 531
Target Start/End: Original strand, 1192789 - 1193084
Alignment:
| Q |
238 |
ccaaacgaaggattcgtaaatcatatcctttaggtttgacaattccctcgagagattattaatcaacctca--aggatatagtgcagtgtctctctaaaa |
335 |
Q |
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| T |
1192789 |
ccaaacgaagtattcttaaatcgtattttttaggtttaacaattccctcgagagattattaatcagatatagtacgatatagtgcggtgtctgtctaaaa |
1192888 |
T |
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| Q |
336 |
attccatgattcttgttttatagaacaaatttaaacatttaaattggaataacactcatttactctcaattctcataaatttcgactacattagcatgaa |
435 |
Q |
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| T |
1192889 |
attccatgattcttgttttatagaacaaatttaaacatttaaattggaataacactcatttactctcaattctcataaatttcgactacattagcatgaa |
1192988 |
T |
|
| Q |
436 |
gaaatattgtgtccaaaaaccaacatgaaagaaatattgtaactgtaatttgaccaacactaagtatagaaccacgtcacttttatgcttcttcat |
531 |
Q |
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| T |
1192989 |
gaaatattgtgtccaagaaccaacatgaaagaaatattgtaactgtaatttgaccaacactaagtatagaaccacgtcacttttatgattcttcat |
1193084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 1192528 - 1192649
Alignment:
| Q |
53 |
tcttcaaagatgctctttgaattcttgtac-------agaggcactttgcttagaatgttacttttcgaggaagattcacatatcaccaccaatttgttg |
145 |
Q |
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| T |
1192528 |
tcttcaaagattctctttgaattcttgtacttgtagtagaggcactttgcttagaatgtcactttttgatgaagattcacatat---caccaatttgttg |
1192624 |
T |
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| Q |
146 |
gatgttattatcctttgaaaaatgt |
170 |
Q |
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| T |
1192625 |
gatgttattatcctttgaaaaatgt |
1192649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 1192573 - 1192612
Alignment:
| Q |
199 |
tttgcttagaatgtcacttttcgacgaagattcacatatc |
238 |
Q |
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| T |
1192573 |
tttgcttagaatgtcactttttgatgaagattcacatatc |
1192612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 45642202 - 45642162
Alignment:
| Q |
459 |
catgaaagaaatattgtaactgtaatttgaccaacactaag |
499 |
Q |
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| T |
45642202 |
catgaaggaaatattgtgactgaaatttgaccaacactaag |
45642162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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