View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_60 (Length: 367)

Name: NF0908_low_60
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_60
NF0908_low_60
[»] chr6 (10 HSPs)
chr6 (38-241)||(10653847-10654050)
chr6 (253-357)||(10653696-10653805)
chr6 (272-315)||(7545418-7545461)
chr6 (272-315)||(24618437-24618480)
chr6 (277-315)||(10589065-10589103)
chr6 (273-315)||(26347494-26347536)
chr6 (278-315)||(16119370-16119407)
chr6 (272-316)||(743652-743696)
chr6 (272-308)||(22997425-22997461)
chr6 (272-308)||(23790940-23790976)
[»] chr8 (15 HSPs)
chr8 (272-315)||(11066438-11066481)
chr8 (272-314)||(29170854-29170896)
chr8 (272-318)||(44673583-44673629)
chr8 (272-315)||(6942469-6942512)
chr8 (272-315)||(18452223-18452266)
chr8 (272-303)||(38745228-38745259)
chr8 (272-315)||(42801587-42801630)
chr8 (272-315)||(43283904-43283947)
chr8 (273-315)||(13647395-13647437)
chr8 (273-315)||(13747820-13747862)
chr8 (272-318)||(33838413-33838459)
chr8 (274-315)||(7381806-7381847)
chr8 (273-322)||(7813485-7813534)
chr8 (272-317)||(28536188-28536233)
chr8 (272-308)||(8034357-8034393)
[»] chr5 (15 HSPs)
chr5 (272-315)||(18756075-18756118)
chr5 (272-315)||(15241485-15241528)
chr5 (272-315)||(16386679-16386722)
chr5 (272-315)||(16891435-16891478)
chr5 (272-315)||(20071418-20071461)
chr5 (272-315)||(37034894-37034937)
chr5 (272-315)||(43580967-43581010)
chr5 (273-315)||(8478831-8478873)
chr5 (273-315)||(32423655-32423697)
chr5 (273-315)||(35241485-35241527)
chr5 (273-315)||(40276381-40276423)
chr5 (272-314)||(41319390-41319432)
chr5 (278-315)||(27095503-27095540)
chr5 (273-321)||(17545104-17545152)
chr5 (273-313)||(34208463-34208503)
[»] chr4 (12 HSPs)
chr4 (272-315)||(56087892-56087935)
chr4 (272-316)||(10417158-10417202)
chr4 (272-315)||(5689146-5689189)
chr4 (272-315)||(13264212-13264255)
chr4 (272-315)||(27743653-27743696)
chr4 (272-315)||(37251202-37251245)
chr4 (272-315)||(39696276-39696319)
chr4 (273-315)||(194615-194657)
chr4 (273-315)||(32760731-32760773)
chr4 (272-317)||(15064138-15064183)
chr4 (272-308)||(37310116-37310152)
chr4 (279-315)||(54854146-54854182)
[»] chr1 (10 HSPs)
chr1 (272-315)||(6213510-6213553)
chr1 (272-315)||(43884883-43884926)
chr1 (273-317)||(33133867-33133911)
chr1 (272-314)||(52369686-52369728)
chr1 (273-314)||(15390310-15390351)
chr1 (282-315)||(32660924-32660957)
chr1 (273-314)||(38851972-38852013)
chr1 (272-313)||(42848679-42848720)
chr1 (272-308)||(27642672-27642708)
chr1 (272-320)||(28564278-28564326)
[»] scaffold0199 (1 HSPs)
scaffold0199 (272-317)||(8850-8895)
[»] chr3 (7 HSPs)
chr3 (273-314)||(44685108-44685149)
chr3 (272-315)||(3894633-3894676)
chr3 (272-315)||(11820093-11820136)
chr3 (272-315)||(17729080-17729123)
chr3 (272-315)||(19030309-19030352)
chr3 (273-315)||(53752638-53752680)
chr3 (273-314)||(38819263-38819304)
[»] scaffold0063 (1 HSPs)
scaffold0063 (272-315)||(56412-56455)
[»] scaffold0003 (1 HSPs)
scaffold0003 (272-315)||(304023-304066)
[»] chr7 (12 HSPs)
chr7 (272-315)||(3529869-3529912)
chr7 (272-315)||(16200648-16200691)
chr7 (272-315)||(29281280-29281323)
chr7 (272-315)||(48288347-48288390)
chr7 (273-315)||(47194363-47194405)
chr7 (272-313)||(7401327-7401368)
chr7 (273-313)||(4232284-4232324)
chr7 (279-315)||(17997707-17997743)
chr7 (272-308)||(28735817-28735853)
chr7 (271-315)||(34891296-34891340)
chr7 (269-313)||(46717265-46717309)
chr7 (273-313)||(49089589-49089629)
[»] chr2 (10 HSPs)
chr2 (282-317)||(10118889-10118924)
chr2 (272-315)||(28153080-28153123)
chr2 (273-315)||(3286995-3287037)
chr2 (273-315)||(8742762-8742804)
chr2 (273-315)||(37063602-37063644)
chr2 (273-315)||(44948686-44948728)
chr2 (278-315)||(34107365-34107402)
chr2 (272-320)||(5400585-5400633)
chr2 (279-315)||(34620608-34620644)
chr2 (279-315)||(39334848-39334884)
[»] scaffold0068 (1 HSPs)
scaffold0068 (273-315)||(46000-46042)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 38 - 241
Target Start/End: Complemental strand, 10654050 - 10653847
Alignment:
Q  38 taaaactcaatttaagcctcttgtatttttcatgtttattcagtttcatttcatctacgaacttgcaatgttgtctggtgctcgtaatttgtaaatcttc 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10654050 taaaactcaatttaagcctcttgtatttttcatgtttattcagtttcatttcatctacgaacttgcaatgttgtctggtgctcgtaatttgtaaatcttc 10653951  T
Q  138 acattttctcttatagatcatgtatcaaggtggtccatattttagacaaagccatgtgtatatttatcactagactattgtgtcactttagtatgttaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10653950 acattttctcttatagatcatgtatcaaggtggtccatattttagacaaagtcatgtgtatatttatcactagactattgtgtcactttagtatgttaat 10653851  T
Q  238 taca 241  Q
    ||||    
T  10653850 taca 10653847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 10653805 - 10653696
Alignment:
Q  253 atctcttcacttatttttaaaattgtgtgatttctagccactagactacttgacaac-----aaaaaagaagataaatttgtctctaatatgaatttctt 347  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || |||||||||     |||||| |||||||||||||||||||||||||||||||    
T  10653805 atctcttcacttatttttaaaattgtgtgagttctagccactaggctgcttgacaacaacaaaaaaaaaaagataaatttgtctctaatatgaatttctt 10653706  T
Q  348 cccgtctgtg 357  Q
    ||||| ||||    
T  10653705 cccgtttgtg 10653696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 7545418 - 7545461
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  7545418 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 7545461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 24618480 - 24618437
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||    
T  24618480 aaattgtgtgagttctagccactagactacttgaccaaaaaaaa 24618437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 10589103 - 10589065
Alignment:
Q  277 gtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  10589103 gtgtgagttctagccactagactacttgacaaaaaaaaa 10589065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 26347494 - 26347536
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  26347494 aattgtgtgagctctagccactagactacttgacaataaaaaa 26347536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 16119370 - 16119407
Alignment:
Q  278 tgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  16119370 tgtgaattctagccactagactacttgacaaaaaaaaa 16119407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 743652 - 743696
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaag 316  Q
    |||||||| ||  |||||||||||||||||||||||| |||||||    
T  743652 aaattgtgcgagctctagccactagactacttgacaaaaaaaaag 743696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 22997425 - 22997461
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaa 308  Q
    |||||||||||  ||||||||||||||||||||||||    
T  22997425 aaattgtgtgagctctagccactagactacttgacaa 22997461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 23790976 - 23790940
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaa 308  Q
    |||||||||||  ||||||||||||||||||||||||    
T  23790976 aaattgtgtgagctctagccactagactacttgacaa 23790940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 11066481 - 11066438
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||    
T  11066481 aaattgtgtgagttctagccactagactatttgacaacaaaaaa 11066438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 29170854 - 29170896
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaa 314  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  29170854 aaattgtgtgagttctagccactagactacttgacaaaaaaaa 29170896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 44673629 - 44673583
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaagaa 318  Q
    |||||||||||  |||||||||||||||||||||||| |||||||||    
T  44673629 aaattgtgtgagctctagccactagactacttgacaaaaaaaaagaa 44673583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 6942512 - 6942469
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  6942512 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 6942469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 18452266 - 18452223
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||    
T  18452266 aaattgtgtgatctctagctactagactacttgacaaaaaaaaa 18452223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 38745259 - 38745228
Alignment:
Q  272 aaattgtgtgatttctagccactagactactt 303  Q
    ||||||||||||||||||||||||||||||||    
T  38745259 aaattgtgtgatttctagccactagactactt 38745228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 42801630 - 42801587
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||    
T  42801630 aaattgtgtgagttctaaccactagactacttgacaaaaaaaaa 42801587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 43283947 - 43283904
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  43283947 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 43283904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 13647437 - 13647395
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  13647437 aattgtgtgagctctagccactagactacttgacaaaaaaaaa 13647395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 13747862 - 13747820
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  13747862 aattgtgtgagctctagccactagactacttgacaaaaaaaaa 13747820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 33838413 - 33838459
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaagaa 318  Q
    |||||||||||  |||||||||||| ||||||||||| |||||||||    
T  33838413 aaattgtgtgagctctagccactaggctacttgacaaaaaaaaagaa 33838459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 7381847 - 7381806
Alignment:
Q  274 attgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||| |||||||||| |||||||||||||| ||||||    
T  7381847 attgtgtgagttctagccaccagactacttgacaaaaaaaaa 7381806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 7813534 - 7813485
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaagaagata 322  Q
    ||||||||||  |||||||||| ||||||||||||| |||||| ||||||    
T  7813534 aattgtgtgagctctagccactggactacttgacaaaaaaaaaaaagata 7813485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 28536233 - 28536188
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaaga 317  Q
    ||||||||||| |||||||||||||| || ||||||| ||||||||    
T  28536233 aaattgtgtgagttctagccactagattatttgacaaaaaaaaaga 28536188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 8034393 - 8034357
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaa 308  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  8034393 aaattgtgtgagttctagccactaggctacttgacaa 8034357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 18756075 - 18756118
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  18756075 aaattgtgtgagttctagccactagactacttgacaaaaaaaaa 18756118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 15241485 - 15241528
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  15241485 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 15241528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 16386722 - 16386679
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  16386722 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 16386679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 16891435 - 16891478
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  16891435 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 16891478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 20071461 - 20071418
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||    
T  20071461 aaattgtgtgaattctagccactagactacttgaccaaaaaaaa 20071418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 37034894 - 37034937
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||    
T  37034894 aaattgtgtaaattctagccactagactacttgacaaaaaaaaa 37034937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 43580967 - 43581010
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  43580967 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 43581010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 8478873 - 8478831
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  8478873 aattgtgtgagctctagccactagactacttgacaaaaaaaaa 8478831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 32423655 - 32423697
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||| ||||||||||||||||||||||| | ||||||    
T  32423655 aattgtgtgagttctagccactagactacttgaccaaaaaaaa 32423697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 35241485 - 35241527
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||| || |||||||||||||||||||||| ||||||    
T  35241485 aattgtgtgagttttagccactagactacttgacaaaaaaaaa 35241527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 40276423 - 40276381
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||| |||||||||||||| |||||||||| ||||||    
T  40276423 aattgtgtgagttctagccactagaatacttgacaaaaaaaaa 40276381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 41319432 - 41319390
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaa 314  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  41319432 aaattgtgtgagctctagccactagactacttgacaaaaaaaa 41319390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 27095540 - 27095503
Alignment:
Q  278 tgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  27095540 tgtgaattctagccactagactacttgacaaaaaaaaa 27095503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 17545152 - 17545104
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaagaagat 321  Q
    ||||||||||  |||||||||||| ||||||||||| |||||| |||||    
T  17545152 aattgtgtgagctctagccactaggctacttgacaaaaaaaaaaaagat 17545104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 34208463 - 34208503
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaa 313  Q
    |||||||||| ||||||||||||| ||||||||||| ||||    
T  34208463 aattgtgtgagttctagccactaggctacttgacaaaaaaa 34208503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 56087935 - 56087892
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  56087935 aaattgtgtgagttctagccactagactacttgacaaaaaaaaa 56087892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 10417202 - 10417158
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaag 316  Q
    |||||||||||  |||||||||||||||||||||||| |||||||    
T  10417202 aaattgtgtgagctctagccactagactacttgacaaaaaaaaag 10417158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 5689146 - 5689189
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||    
T  5689146 aaattgtgtgaattctagccactaggctacttgacaaaaaaaaa 5689189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 13264255 - 13264212
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  13264255 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 13264212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 27743696 - 27743653
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||||||||| | ||||||||||||||||| ||||||    
T  27743696 aaattgtgtgatttctaactactagactacttgacaaaaaaaaa 27743653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 37251202 - 37251245
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  37251202 aaattgtgtgaactctagccactagactacttgacaaaaaaaaa 37251245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 39696319 - 39696276
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  39696319 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 39696276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 194657 - 194615
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||| |||||||||||| |||||||||||| ||||||    
T  194657 aattgtgtgagttctagccactatactacttgacaaaaaaaaa 194615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 32760731 - 32760773
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||| ||||||||||||||||||||||| | ||||||    
T  32760731 aattgtgtgaattctagccactagactacttgaccaaaaaaaa 32760773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 15064183 - 15064138
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaaga 317  Q
    |||||||||||  ||||||||||| |||||||||||| ||||||||    
T  15064183 aaattgtgtgagctctagccactaaactacttgacaaaaaaaaaga 15064138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 37310116 - 37310152
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaa 308  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  37310116 aaattgtgtgaattctaaccactagactacttgacaa 37310152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 54854182 - 54854146
Alignment:
Q  279 gtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  54854182 gtgaattctagccactagactacttgacaaaaaaaaa 54854146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 6213510 - 6213553
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  6213510 aaattgtgtgagttctagccactagactacttgacaaaaaaaaa 6213553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 43884883 - 43884926
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  43884883 aaattgtgtgagttctagccactagactacttgacaaaaaaaaa 43884926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 33133911 - 33133867
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaaga 317  Q
    |||||||||| ||||||||||||||||||||||| | ||||||||    
T  33133911 aattgtgtgagttctagccactagactacttgactaaaaaaaaga 33133867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 52369686 - 52369728
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaa 314  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  52369686 aaattgtgtgagctctagccactagactacttgacaaaaaaaa 52369728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 15390310 - 15390351
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaa 314  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
T  15390310 aattgtgtgagttctagccactaggctacttgacaaaaaaaa 15390351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 32660924 - 32660957
Alignment:
Q  282 atttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||||||| ||||||||||||||||||    
T  32660924 atttctagccactaggctacttgacaacaaaaaa 32660957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 38852013 - 38851972
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaa 314  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
T  38852013 aattgtgtgagttctagccactaggctacttgacaaaaaaaa 38851972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 42848720 - 42848679
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaa 313  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||    
T  42848720 aaattgtgtgagttctaaccactagactacttgacaaaaaaa 42848679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 27642708 - 27642672
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaa 308  Q
    |||||||||||  ||||||||||||||||||||||||    
T  27642708 aaattgtgtgagctctagccactagactacttgacaa 27642672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 28564326 - 28564278
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaagaaga 320  Q
    |||||||||||  |||||||||||| ||||||||||| |||||| ||||    
T  28564326 aaattgtgtgagctctagccactaggctacttgacaaaaaaaaaaaaga 28564278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 8895 - 8850
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaaga 317  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||    
T  8895 aaattgtgtgagttctagccactaggctacttgacaaaaaaaaaga 8850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 44685149 - 44685108
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaa 314  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  44685149 aattgtgtgagttctagccactagactacttgacaaaaaaaa 44685108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 3894633 - 3894676
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  3894633 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 3894676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 11820093 - 11820136
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  11820093 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 11820136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 17729080 - 17729123
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  17729080 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 17729123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 19030309 - 19030352
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  19030309 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 19030352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 53752680 - 53752638
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||    
T  53752680 aattgtgtgagttctagccactaggctacttgacaaaaaaaaa 53752638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 38819304 - 38819263
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaa 314  Q
    ||||||||||  |||||||||||||||||||||||| |||||    
T  38819304 aattgtgtgagctctagccactagactacttgacaaaaaaaa 38819263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 56412 - 56455
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||| || |||||||||||||||||||||| ||||||    
T  56412 aaattgtgtgagttttagccactagactacttgacaaaaaaaaa 56455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 304066 - 304023
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||    
T  304066 aaattgtgtgaattctagccactagactacttgaccaaaaaaaa 304023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 3529869 - 3529912
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  3529869 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 3529912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 16200648 - 16200691
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||    
T  16200648 aaattgtgtgatctctagctactagactacttgacaaaaaaaaa 16200691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 29281323 - 29281280
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  29281323 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 29281280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 48288390 - 48288347
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  48288390 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 48288347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 47194405 - 47194363
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||    
T  47194405 aattgtgtgagttctagccactaggctacttgacaaaaaaaaa 47194363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 7401368 - 7401327
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaa 313  Q
    |||||||||||  |||||||||||||||||||||||| ||||    
T  7401368 aaattgtgtgagctctagccactagactacttgacaaaaaaa 7401327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 4232324 - 4232284
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaa 313  Q
    |||||||||| |||||| |||||||||||||||||| ||||    
T  4232324 aattgtgtgagttctagtcactagactacttgacaaaaaaa 4232284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 17997743 - 17997707
Alignment:
Q  279 gtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  17997743 gtgaattctagccactagactacttgacaaaaaaaaa 17997707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 28735817 - 28735853
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaa 308  Q
    |||||||||||| |||||||||||| |||||||||||    
T  28735817 aaattgtgtgatctctagccactaggctacttgacaa 28735853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 34891296 - 34891340
Alignment:
Q  271 aaaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||| ||||||| ||||||||||||||||||||||| | ||||||    
T  34891296 aaaaatgtgtgagttctagccactagactacttgaccaaaaaaaa 34891340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 46717265 - 46717309
Alignment:
Q  269 ttaaaattgtgtgatttctagccactagactacttgacaacaaaa 313  Q
    |||||| ||||||  ||||||||||||||||||||||||| ||||    
T  46717265 ttaaaaatgtgtgcattctagccactagactacttgacaaaaaaa 46717309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 49089589 - 49089629
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaa 313  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  49089589 aattgtgtgagctctagccactagactacttgacaaaaaaa 49089629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 317
Target Start/End: Complemental strand, 10118924 - 10118889
Alignment:
Q  282 atttctagccactagactacttgacaacaaaaaaga 317  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10118924 atttctagccactagactacttgacaaaaaaaaaga 10118889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 28153123 - 28153080
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  28153123 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 28153080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 3287037 - 3286995
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  3287037 aattgtgtgagctctagccactagactacttgacaaaaaaaaa 3286995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 8742804 - 8742762
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  8742804 aattgtgtgaactctagccactagactacttgacaaaaaaaaa 8742762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 37063602 - 37063644
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  37063602 aattgtgtgagctctagccactagactacttgacaaaaaaaaa 37063644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 44948686 - 44948728
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||| ||||||||||||||||||||||| | ||||||    
T  44948686 aattgtgtgagttctagccactagactacttgaccaaaaaaaa 44948728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 34107365 - 34107402
Alignment:
Q  278 tgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  34107365 tgtgaattctagccactagactacttgacaaaaaaaaa 34107402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 5400633 - 5400585
Alignment:
Q  272 aaattgtgtgatttctagccactagactacttgacaacaaaaaagaaga 320  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||| ||||    
T  5400633 aaattctgtgagttctagccactaggctacttgacaaaaaaaaaaaaga 5400585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 34620608 - 34620644
Alignment:
Q  279 gtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  34620608 gtgaattctagccactagactacttgacaaaaaaaaa 34620644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 39334884 - 39334848
Alignment:
Q  279 gtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  39334884 gtgaattctagccactagactacttgacaaaaaaaaa 39334848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 46000 - 46042
Alignment:
Q  273 aattgtgtgatttctagccactagactacttgacaacaaaaaa 315  Q
    |||||||||| |||||||||||| |||||||||||| ||||||    
T  46000 aattgtgtgagttctagccactaaactacttgacaataaaaaa 46042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 284 times since January 2019
Visitors: 6696