View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_62 (Length: 367)
Name: NF0908_low_62
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 37704474 - 37704647
Alignment:
| Q |
1 |
agattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattca |
100 |
Q |
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| T |
37704474 |
agattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattca |
37704573 |
T |
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| Q |
101 |
gtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaat |
174 |
Q |
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| T |
37704574 |
gtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaat |
37704647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 37699008 - 37699169
Alignment:
| Q |
14 |
attgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatag |
113 |
Q |
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| T |
37699008 |
attgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgacatttggcaacaatattaattcagtaacaatcatag |
37699107 |
T |
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| Q |
114 |
aaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaat |
174 |
Q |
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| T |
37699108 |
aaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaat |
37699169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 37437540 - 37437713
Alignment:
| Q |
1 |
agattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattca |
100 |
Q |
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| T |
37437540 |
agattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaattggcaacaatattaattca |
37437638 |
T |
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| Q |
101 |
gtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaat |
174 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| || || ||||||| |||||||| ||||||||| |
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| T |
37437639 |
ataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaat |
37437713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 37698732 - 37698805
Alignment:
| Q |
102 |
taaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaat |
174 |
Q |
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| T |
37698732 |
taacaatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaat |
37698805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37698656 - 37698697
Alignment:
| Q |
1 |
agattgtttgcaaattgagtctacgtattcccttattttgtt |
42 |
Q |
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| T |
37698656 |
agattgtttacaaattgagtctaagtattcccttattttgtt |
37698697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 175 - 319
Target Start/End: Complemental strand, 5052131 - 5051987
Alignment:
| Q |
175 |
gccttcttggcaatgtcaatactttgaacctcactatctttaagagtggcctatgaacatggcagtaagtaaagggaatgagggggttaaagtacacaac |
274 |
Q |
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| T |
5052131 |
gccttcttggcaatgtcaatacattgaacctcactgtctttgagagtggcctatgaacatggcagtaagtaaagggaatgagggggttaaagtacacaac |
5052032 |
T |
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| Q |
275 |
taatagatatcaaatgtcatggcccctcaatcttctcctcgtgat |
319 |
Q |
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| T |
5052031 |
taatagatatcaaatgtcatgtcccctcaatcttctcctcgtgat |
5051987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 16841109 - 16841043
Alignment:
| Q |
109 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaat |
174 |
Q |
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|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||| |
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| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaat |
16841043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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