View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_64 (Length: 353)
Name: NF0908_low_64
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_64 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 3988556 - 3988244
Alignment:
| Q |
15 |
tatcaagttcgattcttcatagtgtcaatttcggtgatctaagtccatagctctaactctaactttaaatgggtttcttacaaatagatggtagaatcgt |
114 |
Q |
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|||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |
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| T |
3988556 |
tatcaaattcgattattcataatgtcaatttcgatgatctaagtccatagctctaactctaactttaaatgggtttcttataaatggatggtagaattga |
3988457 |
T |
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| Q |
115 |
accactcgaa---gtcggtccttaaacctgatatcaaattttcaaaaaacattcgcattnnnnnnngtaacattaataatcatttcactaactatttcta |
211 |
Q |
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|||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3988456 |
accactcgaattagtcgatccttagacctgatatcaaattttcaaaaaacattcgcattaaaaaaagtaacattaataatcatttcactaactatttcta |
3988357 |
T |
|
| Q |
212 |
aagtgatttgaaatgtccttttgaagtcatactatttgtagaataaaaaatgtccttttggaattatttctaaagtgatttgaaagtaacatagaataat |
311 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3988356 |
aagtgatttgaaatgtccttttgaagtcacactatttgtagaaccaataatgtccttttggaattatttctaaagtgatttggaagtaacatagaataat |
3988257 |
T |
|
| Q |
312 |
tccttctaagaac |
324 |
Q |
| |
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||||||||||||| |
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| T |
3988256 |
tccttctaagaac |
3988244 |
T |
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