View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_66 (Length: 350)

Name: NF0908_low_66
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_66
NF0908_low_66
[»] chr3 (4 HSPs)
chr3 (134-252)||(49234533-49234651)
chr3 (122-252)||(49233950-49234080)
chr3 (81-143)||(49234447-49234509)
chr3 (81-131)||(49233876-49233926)
[»] chr1 (2 HSPs)
chr1 (122-252)||(50862397-50862527)
chr1 (88-131)||(50862551-50862594)
[»] chr2 (3 HSPs)
chr2 (122-219)||(24455752-24455848)
chr2 (81-131)||(1615171-1615221)
chr2 (81-131)||(24455872-24455922)
[»] chr8 (3 HSPs)
chr8 (86-195)||(14839077-14839187)
chr8 (117-219)||(43227984-43228089)
chr8 (81-131)||(43228108-43228158)
[»] chr7 (1 HSPs)
chr7 (86-195)||(27962503-27962613)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 49234533 - 49234651
Alignment:
Q  134 aaaattaccttgaaccagctctgaatagttaagcacacatttggatatgaaaataaagaaacgcattccataagcatatatcttggcagaagactatagt 233  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49234533 aaaattaccttgaaccagctctgaataattaagcacacatctggatatgaaaataaagaaacgcattccataagcatatatcttggaagaagactatagt 49234632  T
Q  234 agcattataaatacatgcc 252  Q
    |||||| ||||||||||||    
T  49234633 agcattgtaaatacatgcc 49234651  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 122 - 252
Target Start/End: Original strand, 49233950 - 49234080
Alignment:
Q  122 aaattatgcaagaaaattaccttgaaccagctctgaatagttaagcacacatttggatatgaaaataaagaaacgcattccataagcatatatcttggca 221  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||  |||||||||||||||||| |||| |    
T  49233950 aaattatgca-gaaaattaccttgaaccagctctgaatagttaagcacacatatggatatgaaaaaaaagaaagacattccataagcatatattttggaa 49234048  T
Q  222 gaagactatagtagcattat-aaatacatgcc 252  Q
    |||||||||||||||||||| |||||||||||    
T  49234049 gaagactatagtagcattataaaatacatgcc 49234080  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 49234447 - 49234509
Alignment:
Q  81 gctgttgcactacattagtccacatgcagaaaaccaactctaaattatgcaagaaaattacct 143  Q
    |||| |||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  49234447 gctgctgcattacattagcccacatgcagaaaaccagctctaaattatgcaagaaaatcacct 49234509  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 49233876 - 49233926
Alignment:
Q  81 gctgttgcactacattagtccacatgcagaaaaccaactctaaattatgca 131  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||||||||    
T  49233876 gctgctgcactacattagtccacatgccgaaaaccagctctaaattatgca 49233926  T

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Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 122 - 252
Target Start/End: Complemental strand, 50862527 - 50862397
Alignment:
Q  122 aaattatgcaagaaaattaccttgaaccagctctgaatagttaagcacacatttggatatgaaaataaagaaacgcattccataagcatatatcttggca 221  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||||||||| |||| |    
T  50862527 aaattatgca-gaaaactaccttgaaccagctctgaatagataagcacacatttggatatgaaaatgaagaaaaacattccataagcatatattttggaa 50862429  T
Q  222 gaagactatagtagcattat-aaatacatgcc 252  Q
    |||||||||||||||||||| |||||||||||    
T  50862428 gaagactatagtagcattataaaatacatgcc 50862397  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 50862594 - 50862551
Alignment:
Q  88 cactacattagtccacatgcagaaaaccaactctaaattatgca 131  Q
    |||||||||||||||||||| ||||| || ||||||||||||||    
T  50862594 cactacattagtccacatgccgaaaatcagctctaaattatgca 50862551  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 24455848 - 24455752
Alignment:
Q  122 aaattatgcaagaaaattaccttgaaccagctctgaatagttaagcacacatttggatatgaaaataaagaaacgcattccataagcatatatcttgg 219  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||||| ||||    
T  24455848 aaattatgca-gaaaattaccttgaaccagctctgaatagttaagcacacatctgtatatgaaaataaagaaacacatttcataagcatatattttgg 24455752  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 1615171 - 1615221
Alignment:
Q  81 gctgttgcactacattagtccacatgcagaaaaccaactctaaattatgca 131  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  1615171 gctgctgcactacattagtccacatgtagaaaaccagctctaaattatgca 1615221  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 24455922 - 24455872
Alignment:
Q  81 gctgttgcactacattagtccacatgcagaaaaccaactctaaattatgca 131  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  24455922 gctgttgcattacattagtccacatgccgaaaaccagctctaaattatgca 24455872  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 14839187 - 14839077
Alignment:
Q  86 tgcactacattagtccacatgcagaaaaccaactctaaattatgcaagaaaattaccttgaaccagctctgaatagttaagcac--acatttggatatga 183  Q
    |||| |||||||||||| |||| |||||||| ||||||| ||||   |||||||||||||||||||||||||||||||||||||  |||| || ||||||    
T  14839187 tgcattacattagtccatatgctgaaaaccagctctaaactatgtc-gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatga 14839089  T
Q  184 aaataaagaaac 195  Q
    ||||||||||||    
T  14839088 aaataaagaaac 14839077  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 43228089 - 43227984
Alignment:
Q  117 actctaaattatgcaagaaaattaccttgaaccagctctgaatagttaagcac--acatttggatatgaaaataaagaaacgc--attccataagcatat 212  Q
    |||| |||||||||| |||||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||||||| |  |||||||||||||||    
T  43228089 actccaaattatgca-gaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatatgaaaataaagaaacacatattccataagcatat 43227991  T
Q  213 atcttgg 219  Q
    || ||||    
T  43227990 attttgg 43227984  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 43228158 - 43228108
Alignment:
Q  81 gctgttgcactacattagtccacatgcagaaaaccaactctaaattatgca 131  Q
    |||| |||||||||||||||||||||| |||| ||||||||||||||||||    
T  43228158 gctgctgcactacattagtccacatgccgaaagccaactctaaattatgca 43228108  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 27962503 - 27962613
Alignment:
Q  86 tgcactacattagtccacatgcagaaaaccaactctaaattatgcaagaaaattaccttgaaccagctctgaatagttaagcac--acatttggatatga 183  Q
    |||| |||||||||||| |||| |||||||| ||||||| ||||   |||||||||||||||||||||||||||||||||||||  |||| || ||||||    
T  27962503 tgcattacattagtccatatgctgaaaaccagctctaaactatgtc-gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatga 27962601  T
Q  184 aaataaagaaac 195  Q
    ||||||||||||    
T  27962602 aaataaagaaac 27962613  T

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