View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_67 (Length: 349)

Name: NF0908_low_67
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_67
NF0908_low_67
[»] chr4 (19 HSPs)
chr4 (42-334)||(7723515-7723807)
chr4 (192-278)||(6659332-6659419)
chr4 (192-278)||(19935487-19935574)
chr4 (203-279)||(13991391-13991469)
chr4 (192-274)||(40206153-40206236)
chr4 (192-280)||(24667655-24667744)
chr4 (203-279)||(17254895-17254973)
chr4 (208-279)||(54700614-54700687)
chr4 (201-275)||(18657052-18657128)
chr4 (228-278)||(38888028-38888079)
chr4 (203-272)||(50515907-50515978)
chr4 (192-279)||(7634079-7634167)
chr4 (236-281)||(21433610-21433655)
chr4 (196-280)||(7724082-7724165)
chr4 (228-278)||(18689559-18689610)
chr4 (241-279)||(13990729-13990767)
chr4 (207-275)||(22486792-22486861)
chr4 (241-278)||(9260573-9260610)
chr4 (228-280)||(10494901-10494954)
[»] chr2 (26 HSPs)
chr2 (192-278)||(36647293-36647380)
chr2 (192-281)||(15129387-15129477)
chr2 (192-278)||(27952319-27952407)
chr2 (201-280)||(23457644-23457725)
chr2 (192-278)||(22011436-22011524)
chr2 (192-278)||(33655628-33655715)
chr2 (192-275)||(2155970-2156055)
chr2 (192-279)||(33051617-33051706)
chr2 (192-278)||(27956155-27956243)
chr2 (192-278)||(31636337-31636425)
chr2 (203-279)||(5171597-5171675)
chr2 (203-280)||(12966475-12966553)
chr2 (203-280)||(21772373-21772451)
chr2 (192-275)||(31634107-31634192)
chr2 (203-273)||(28737911-28737982)
chr2 (192-280)||(1518191-1518280)
chr2 (5-46)||(40925136-40925177)
chr2 (203-278)||(4184929-4185006)
chr2 (228-279)||(32162007-32162059)
chr2 (275-334)||(27955588-27955647)
chr2 (203-274)||(8294582-8294655)
chr2 (207-274)||(28737841-28737910)
chr2 (192-278)||(32163773-32163860)
chr2 (232-273)||(23456580-23456622)
chr2 (228-273)||(2165899-2165944)
chr2 (243-279)||(12123950-12123986)
[»] chr8 (27 HSPs)
chr8 (192-278)||(2189723-2189810)
chr8 (202-276)||(42890394-42890469)
chr8 (192-278)||(42891665-42891753)
chr8 (192-275)||(24731035-24731120)
chr8 (192-278)||(22921851-22921939)
chr8 (192-274)||(24731231-24731315)
chr8 (192-280)||(18468647-18468736)
chr8 (192-278)||(6845336-6845424)
chr8 (192-278)||(22512047-22512135)
chr8 (192-278)||(22519347-22519435)
chr8 (192-278)||(22926649-22926737)
chr8 (192-278)||(37189866-37189954)
chr8 (214-278)||(23570584-23570649)
chr8 (236-279)||(2687741-2687784)
chr8 (204-278)||(26374900-26374975)
chr8 (275-334)||(42890989-42891048)
chr8 (228-278)||(23573583-23573633)
chr8 (214-281)||(16598246-16598315)
chr8 (214-278)||(22520823-22520888)
chr8 (192-248)||(26378031-26378088)
chr8 (230-280)||(2689144-2689195)
chr8 (203-280)||(14130163-14130242)
chr8 (203-280)||(20693797-20693876)
chr8 (275-334)||(42891109-42891168)
chr8 (241-278)||(2609547-2609584)
chr8 (275-334)||(23571093-23571151)
chr8 (192-228)||(18180714-18180750)
[»] chr1 (22 HSPs)
chr1 (192-280)||(31915548-31915637)
chr1 (192-278)||(8931220-8931308)
chr1 (204-279)||(12944115-12944192)
chr1 (192-278)||(50857445-50857533)
chr1 (217-275)||(13444015-13444074)
chr1 (203-280)||(28660758-28660837)
chr1 (202-280)||(31913375-31913454)
chr1 (203-278)||(9031017-9031094)
chr1 (192-271)||(40058103-40058184)
chr1 (207-278)||(50713713-50713786)
chr1 (236-271)||(10927199-10927234)
chr1 (207-274)||(43681465-43681535)
chr1 (203-279)||(10925739-10925814)
chr1 (203-278)||(10928289-10928366)
chr1 (281-334)||(13443411-13443464)
chr1 (203-278)||(28661080-28661157)
chr1 (228-280)||(33152757-33152810)
chr1 (203-273)||(23987581-23987653)
chr1 (203-280)||(239685-239764)
chr1 (206-279)||(8221487-8221562)
chr1 (235-281)||(8967850-8967896)
chr1 (228-273)||(26981516-26981561)
[»] chr7 (29 HSPs)
chr7 (192-278)||(13882687-13882775)
chr7 (192-275)||(5934607-5934691)
chr7 (192-275)||(13886160-13886245)
chr7 (195-279)||(30217814-30217898)
chr7 (192-278)||(859157-859245)
chr7 (192-278)||(1217161-1217249)
chr7 (203-280)||(3778721-3778799)
chr7 (192-280)||(4888687-4888776)
chr7 (204-281)||(1883486-1883565)
chr7 (214-279)||(27309638-27309705)
chr7 (203-279)||(11000838-11000916)
chr7 (209-281)||(1365669-1365742)
chr7 (228-280)||(24840141-24840194)
chr7 (228-280)||(27142664-27142717)
chr7 (203-280)||(1369803-1369882)
chr7 (192-279)||(1874537-1874626)
chr7 (197-278)||(1220446-1220529)
chr7 (232-281)||(1753640-1753690)
chr7 (228-271)||(8063842-8063885)
chr7 (203-279)||(4133286-4133364)
chr7 (192-280)||(7803032-7803122)
chr7 (228-281)||(11228978-11229032)
chr7 (236-281)||(1786680-1786725)
chr7 (203-278)||(6451762-6451839)
chr7 (199-280)||(13466729-13466812)
chr7 (213-279)||(35814870-35814937)
chr7 (241-279)||(11228720-11228758)
chr7 (192-279)||(8916379-8916467)
chr7 (246-275)||(13886245-13886274)
[»] chr6 (20 HSPs)
chr6 (192-278)||(3536034-3536122)
chr6 (192-278)||(3542245-3542333)
chr6 (206-274)||(11658936-11659005)
chr6 (199-273)||(8048974-8049049)
chr6 (192-280)||(27822119-27822209)
chr6 (209-280)||(14238434-14238507)
chr6 (195-278)||(29340810-29340895)
chr6 (192-274)||(30049920-30050004)
chr6 (192-278)||(33615505-33615593)
chr6 (228-274)||(30052207-30052253)
chr6 (203-271)||(18727115-18727184)
chr6 (203-278)||(12882123-12882200)
chr6 (192-271)||(18718201-18718279)
chr6 (195-270)||(22889268-22889345)
chr6 (195-270)||(22910810-22910887)
chr6 (211-274)||(1127258-1127323)
chr6 (193-225)||(8047390-8047422)
chr6 (195-270)||(22873822-22873897)
chr6 (236-281)||(24443118-24443163)
chr6 (228-272)||(33215201-33215246)
[»] chr3 (11 HSPs)
chr3 (192-278)||(5128909-5128997)
chr3 (192-278)||(43303961-43304049)
chr3 (192-278)||(43306673-43306761)
chr3 (192-280)||(2472690-2472779)
chr3 (192-278)||(3063738-3063826)
chr3 (192-278)||(3068876-3068964)
chr3 (275-334)||(43306216-43306275)
chr3 (192-279)||(365594-365682)
chr3 (203-281)||(33175832-33175912)
chr3 (203-281)||(52708841-52708921)
chr3 (228-271)||(45168358-45168401)
[»] chr5 (8 HSPs)
chr5 (191-278)||(21848965-21849054)
chr5 (236-280)||(19497351-19497395)
chr5 (192-278)||(40778787-40778875)
chr5 (209-278)||(492567-492638)
chr5 (203-281)||(22440855-22440934)
chr5 (239-279)||(18252415-18252455)
chr5 (203-279)||(26140342-26140420)
chr5 (232-280)||(9868447-9868496)
[»] scaffold0054 (3 HSPs)
scaffold0054 (204-275)||(37714-37786)
scaffold0054 (228-281)||(49319-49372)
scaffold0054 (195-270)||(10663-10740)
[»] scaffold0531 (1 HSPs)
scaffold0531 (199-273)||(11597-11672)
[»] scaffold0251 (1 HSPs)
scaffold0251 (192-280)||(9700-9791)
[»] scaffold0110 (2 HSPs)
scaffold0110 (192-262)||(46734-46806)
scaffold0110 (237-278)||(45310-45351)
[»] scaffold0240 (3 HSPs)
scaffold0240 (202-275)||(14850-14924)
scaffold0240 (212-279)||(1657-1725)
scaffold0240 (207-274)||(16051-16119)
[»] scaffold0024 (1 HSPs)
scaffold0024 (203-279)||(145733-145811)
[»] scaffold0236 (1 HSPs)
scaffold0236 (204-280)||(16396-16473)
[»] scaffold0330 (1 HSPs)
scaffold0330 (212-279)||(17639-17707)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 42 - 334
Target Start/End: Original strand, 7723515 - 7723807
Alignment:
Q  42 aaggttgatgctatccactctaggaaaggtaaatatccataattttaatttcgttccaattcaatgtcaagcaaccaatcattccaaacctcttaccaca 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7723515 aaggttgatgctatccactctaggcaaggtaaatatccataattttaatttcgttccaattcaatgtcaagcaaccaagcattccaaacctcttaccaca 7723614  T
Q  142 aactatttaatcaccttctccctcgggggaaggttgttacgatccttaacgacgcagtacagaagcgtaggctagcaagcactaaactagattgaaaaga 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7723615 aactatttaatcaccttctccctcgggggaaggttgttacgatccttaacgacgcagtacagaagcgtaggctagcaagcgctaaactagattgaaaaga 7723714  T
Q  242 acaagtttgcaagcgacaaacttgtgaaaatagggttccacagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 334  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  7723715 acaagtttgcaagctacaaacttgtgaaaatagggttccacagacgtcggaaacgcttcggtcgtctgagcaacgtcgatctcctcttgcaac 7723807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 6659332 - 6659419
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||| ||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6659332 gacgcagtacggaagtgtaggttagcaagcgctaaatctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 6659419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 19935574 - 19935487
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaact-agattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||||||||||||||||||| ||| ||||||| |||| ||||| || || |||||||||||||||||| |||||||||||||    
T  19935574 gacgcagtacagaagcgtaggctagccagcgctaaactcagatagaaaaaaataaatttgcaagcgacaaacttatgaaaatagggtt 19935487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 13991391 - 13991469
Alignment:
Q  203 gaagcgtaggctagcaagcactaaa-ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| || ||||||| |||||    
T  13991391 gaagcgtaggctagcaagcgctaaatctagattgaaaagaaacaagtttgcaagcgacaaacatgcgaaaataaggttc 13991469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 40206236 - 40206153
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 274  Q
    |||||| ||| ||||||||||||||||||| ||||| ||| |||||||   ||||||| |||||||||||||||||||||||||    
T  40206236 gacgcactacggaagcgtaggctagcaagcgctaaatctaaattgaaagagacaagttcgcaagcgacaaacttgtgaaaatag 40206153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 24667744 - 24667655
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||||||  |||||||||||||||||||  ||||| ||||| |||||||| ||| | ||| || ||||||||||||||||||||||||    
T  24667744 gacgcagtatggaagcgtaggctagcaagcgttaaacctagatagaaaagaagaagctcgcaggcaacaaacttgtgaaaatagggttcc 24667655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 17254895 - 17254973
Alignment:
Q  203 gaagcgtaggctagcaagcactaaact-agattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    ||||||||||||||||| | ||||||| |||||||| | |||||| ||| |||||||||||||||||||||||| ||||    
T  17254895 gaagcgtaggctagcaaacgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttc 17254973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 54700614 - 54700687
Alignment:
Q  208 gtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||||||||| | |||||| || ||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  54700614 gtaggctagcaaacgctaaacctatattgaaaagaaacaagtttgcaagtgacaaacttgtgagaatagggttc 54700687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 18657052 - 18657128
Alignment:
Q  201 cagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaa-gtttgcaagcgacaaacttgtgaaaatagg 275  Q
    |||||||||| |||||  |||||||||| |||||||||||||| || ||||||| ||||||||||||| ||||||||    
T  18657052 cagaagcgtaagctagagagcactaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaatagg 18657128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 38888028 - 38888079
Alignment:
Q  228 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  38888028 ctagattgaaaataaacaaatttgcaagcgacaaacttgtgaaaatagggtt 38888079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 50515907 - 50515978
Alignment:
Q  203 gaagcgtaggctagcaagcactaaact-agattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 272  Q
    |||||| |||||||||||| ||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||||    
T  50515907 gaagcggaggctagcaagcgctacacttagactgagaagaaacaagtttgcaagcgacaaacttgtgaaaat 50515978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 7634167 - 7634079
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||||| |||||||||| ||||| ||||  ||||| |||||||||||| ||||||||||||| ||| ||||||||| |||||| ||||    
T  7634167 gacgcagt-cagaagcgtatgctagtaagcgttaaacctagattgaaaaggaacaagtttgcaaacgataaacttgtggaaatagagttc 7634079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 21433610 - 21433655
Alignment:
Q  236 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||    
T  21433610 aaaagaacaaattcgcaagcgacaaacttatgaaaatagggttcca 21433655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 7724082 - 7724165
Alignment:
Q  196 cagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||||||| |||| |||||||||  |||||| || ||||||||||| ||||||||| ||||||||||   |||||||||||||||    
T  7724082 cagtacagaaacgtatgctagcaagtgctaaacctatattgaaaagaagcaagtttgcgagcgacaaac---tgaaaatagggttcc 7724165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 18689559 - 18689610
Alignment:
Q  228 ctagattgaaaagaacaa-gtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||||||||||| || ||||||| ||||||||||||| |||||||||||    
T  18689559 ctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaatagggtt 18689610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 13990729 - 13990767
Alignment:
Q  241 aacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  13990729 aacaagtttgcaagtaacaaacttgtgaaaatagggttc 13990767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 22486792 - 22486861
Alignment:
Q  207 cgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagg 275  Q
    ||||||||||||||| |||||| || || ||||| || |||||||||||||||| ||||||||||||||||    
T  22486792 cgtaggctagcaagcgctaaacctatatagaaaaagaccaagtttgcaagcgac-aacttgtgaaaatagg 22486861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 9260610 - 9260573
Alignment:
Q  241 aacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  9260610 aacaagtttgcaaacgacaaacttgcgaaaatagggtt 9260573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 10494954 - 10494901
Alignment:
Q  228 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||| |||||||| |||||||||||| ||||||| ||||||||||| |||||    
T  10494954 ctagatggaaaagaaacaagtttgcaagtgacaaacctgtgaaaatagagttcc 10494901  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 36647380 - 36647293
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36647380 gacgcagtacggaagcgtaggctagcaagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 36647293  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 15129477 - 15129387
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    |||| ||||| ||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  15129477 gacgtagtacggaagcgtaggctagcaagcgctaaacctagatagaaaagaacaagttcgcaagcgacaaacttgtgaaaatagggttcca 15129387  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 27952319 - 27952407
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27952319 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 27952407  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 23457725 - 23457644
Alignment:
Q  201 cagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||| |||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  23457725 cagaagtgtaggctagcaagcgctaaacctagattgaaaataaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 23457644  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 22011524 - 22011436
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  22011524 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagtgacaaacttgtgaaaatagggtt 22011436  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 33655715 - 33655628
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||| ||||| |||||||| |||||| ||||| |||||  |||||||||||||||||||||||||||||||||||||    
T  33655715 gacgcagtacggaagtgtaggttagcaagcgctaaacctagatagaaaaatacaagtttgcaagcgacaaacttgtgaaaatagggtt 33655628  T

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Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 2156055 - 2155970
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 275  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  2156055 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcgagcgacaaacttgtgaaaatagg 2155970  T

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Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 33051706 - 33051617
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||| ||||| ||||| ||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  33051706 gacgtagtacggaagcttaggctagcaagcgctaaacctaaattgaaaaagaacaagtttgcaagcgacaaacttttgaaaatagggttc 33051617  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 27956155 - 27956243
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||    
T  27956155 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacctatgaaaatagggtt 27956243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 31636425 - 31636337
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||    
T  31636425 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaactagtttgcaagcgacaaacttgtgaaaatatggtt 31636337  T

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Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 5171597 - 5171675
Alignment:
Q  203 gaagcgtaggctagcaagcactaaa-ctagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  5171597 gaagcgtaggttaacaagcgctaaatctagattgaaaagagacaagtttgcaagcgacaaacttgtaaaaatagggttc 5171675  T

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Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 12966553 - 12966475
Alignment:
Q  203 gaagcgtaggctagcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||| ||||||||||| |  |||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  12966553 gaagcataggctagcaaacgttaaatctagattgaaaagaacaagttcgcaagcgacgaacttgtgaaaatagggttcc 12966475  T

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Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 21772451 - 21772373
Alignment:
Q  203 gaagcgtaggctagcaagcactaaact-agattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||||||| |||| | | ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  21772451 gaagcgtaggttagccaacgctaaacttagattgaaaaaaacaagtttgcaagcgacaaacttatgaaaatagggttcc 21772373  T

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Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 31634192 - 31634107
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 275  Q
    |||||||||| |||||||||| | ||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  31634192 gacgcagtacggaagcgtagggttagcaaacgctaaacctagatagaaaagaacaagtttgctagcgacaaacttgtgaaaatagg 31634107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 28737982 - 28737911
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 273  Q
    ||||||||| ||||||||  |||||| ||||||||||||| |||||||||||||||||||||| ||||||||    
T  28737982 gaagcgtagtctagcaagtgctaaacctagattgaaaagagcaagtttgcaagcgacaaacttttgaaaata 28737911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 1518280 - 1518191
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||||||| ||||||||  ||||||||| || ||| |||||||||| | ||||||| ||||||||| ||||| |||||||||||||||    
T  1518280 gacgcagtacggaagcgtatcctagcaagcgcttaacctagattgaaagggacaagttcgcaagcgacgaacttatgaaaatagggttcc 1518191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 40925177 - 40925136
Alignment:
Q  5 cataaacaacattcattcctttgtaaattgattcattaaggt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40925177 cataaacaacattcattcctttgtaaattgattcattaaggt 40925136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 4185006 - 4184929
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaac-aagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||||||||| |||| ||||||  |||||| |||||||  ||||| |||||||||||||||||||||||||||||    
T  4185006 gaagcgtaggctaacaagtactaaatatagattcaaaagaaataagttcgcaagcgacaaacttgtgaaaatagggtt 4184929  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 32162007 - 32162059
Alignment:
Q  228 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  32162007 ctagatcgaaaagaaacaagtttgcaagtgacaaacttgtgaaaatagggttc 32162059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 27955588 - 27955647
Alignment:
Q  275 ggttccacagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 334  Q
    |||||||||||||| | ||||||||| |||||| ||||||||||||| ||||||| ||||    
T  27955588 ggttccacagacgtcgaaaacgcttcggtcgtccgagcaacgtcgatatcctctttcaac 27955647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 8294655 - 8294582
Alignment:
Q  203 gaagcgtaggctagcaagcactaaact-agattgaa-aagaacaagtttgcaagcgacaaacttgtgaaaatag 274  Q
    ||||| ||||||||||||  ||||||| |||| ||| ||||||| ||||||||||||||||||||| |||||||    
T  8294655 gaagcataggctagcaagtgctaaacttagatagaagaagaacacgtttgcaagcgacaaacttgtaaaaatag 8294582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 28737910 - 28737841
Alignment:
Q  207 cgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgac-aaacttgtgaaaatag 274  Q
    ||||||||||||||| |||||| || ||||||||||  ||||||||||| ||| ||||||||||||||||    
T  28737910 cgtaggctagcaagcgctaaacctaaattgaaaagagtaagtttgcaagagacaaaacttgtgaaaatag 28737841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 32163773 - 32163860
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaac-aagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||| |||||||| ||||||| ||||  ||||| ||||||||||||||  ||||||| ||||| |||||||||||||||| ||||    
T  32163773 gacgcagt-cagaagcgaaggctagaaagcgttaaacctagattgaaaagaaataagtttgtaagcgtcaaacttgtgaaaatatggtt 32163860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 23456622 - 23456580
Alignment:
Q  232 attgaaaagaa-caagtttgcaagcgacaaacttgtgaaaata 273  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
T  23456622 attgaaaagaaacaagtttgcaagcgacaaacttttgaaaata 23456580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 2165944 - 2165899
Alignment:
Q  228 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 273  Q
    |||||| ||||||||||||||||||||| |||||||| | ||||||    
T  2165944 ctagatagaaaagaacaagtttgcaagcaacaaacttatcaaaata 2165899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 12123950 - 12123986
Alignment:
Q  243 caagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||||||||||||||||| |||||||||| |||||    
T  12123950 caagtttgcaagcgacaaacctgtgaaaatatggttc 12123986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 2189723 - 2189810
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2189723 gacgcagtacggaagcgtaggctagcaagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaataaggtt 2189810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 42890469 - 42890394
Alignment:
Q  202 agaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaataggg 276  Q
    |||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42890469 agaagcgtaggctagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaataggg 42890394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 42891665 - 42891753
Alignment:
Q  192 gacgcagtacagaagcgtagg-ctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||| ||| |||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42891665 gacgcaatacggaagcgtagggctagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 42891753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 24731120 - 24731035
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaact-agattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaatagg 275  Q
    |||||||||||||| ||||||||||||||| ||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  24731120 gacgcagtacagaaccgtaggctagcaagcgctaaatttagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaatagg 24731035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 22921851 - 22921939
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  22921851 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgcaagcgacaaacttgtgaaaatagggtt 22921939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 24731315 - 24731231
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaatag 274  Q
    |||||||||| | ||||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  24731315 gacgcagtacgggagcgtaggctagcaagcgctaaacctagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaatag 24731231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 18468736 - 18468647
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||||||||||   || |||||||| |||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||||    
T  18468736 gacgcagtacagaagcaagggttagcaagcgctaaacctaggtagaaaagaacaagcttgcaagcgacaaacttgtgaaaatagggttcc 18468647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 6845424 - 6845336
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  6845424 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttacaagcgataaacttgtgaaaatagggtt 6845336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 22512047 - 22512135
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||| ||||| | ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  22512047 gacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22512135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 22519347 - 22519435
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||| ||||| | ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  22519347 gacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22519435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 22926649 - 22926737
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||| ||||| |||||||||| | || |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22926649 gacgtagtacggaagcgtagggttagaaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 37189954 - 37189866
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| ||||| |||| | ||||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  37189954 gacgcagtacggaagcttagggttagcaagctctaaaactagatagaaaagaataagtttgcaagcgacaaacttgtgaaaatagggtt 37189866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 23570649 - 23570584
Alignment:
Q  214 tagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  23570649 tagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaataaggtt 23570584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 2687784 - 2687741
Alignment:
Q  236 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2687784 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 2687741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 26374975 - 26374900
Alignment:
Q  204 aagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||| ||||||||||  ||| | |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  26374975 aagcgtaagctagcaagcgttaagcctagattgaaaagaacaagttcgcaagcgacaaacttgtaaaaatagggtt 26374900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 42891048 - 42890989
Alignment:
Q  275 ggttccacagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 334  Q
    |||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||    
T  42891048 ggtttcacagacgtcggaaacgcttcggtcgtccgagcaacgtcgatctcctctttcaac 42890989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 23573633 - 23573583
Alignment:
Q  228 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||||||||||    
T  23573633 ctagatagaaaataacaagtttacaagcgacaaacttgtgaaaatagggtt 23573583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 16598315 - 16598246
Alignment:
Q  214 tagcaagcactaaact-agattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    |||||||| ||||||| |||||  |||||| |||||||||| ||||||||||||||||||||||||||||    
T  16598315 tagcaagcgctaaacttagattagaaagaaacaagtttgcacgcgacaaacttgtgaaaatagggttcca 16598246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 22520823 - 22520888
Alignment:
Q  214 tagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||| |||||| ||| | ||||||| ||||||||||||||||||| ||||||||||||||||    
T  22520823 tagcaagcgctaaacctaggtagaaaagatcaagtttgcaagcgacaaatttgtgaaaatagggtt 22520888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 26378088 - 26378031
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaagaacaagtt 248  Q
    |||| ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  26378088 gacgtagtacggaagcgtaggctagcaagcgctaaatctagattgaaaagaacaagtt 26378031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 2689195 - 2689144
Alignment:
Q  230 agattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||||||    
T  2689195 agattgaaaagaaacaagtttgcaagcgacaaaactgtgaaaatagggttcc 2689144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 14130242 - 14130163
Alignment:
Q  203 gaagcgtaggctagcaagcactaaa-ctagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||||||||| ||||||  |||| |||||| ||||||| |||||||||||||||| ||| ||||||||||| ||||||    
T  14130242 gaagcgtaggcttgcaagcgttaaatctagatcgaaaagagacaagtttgcaagcgataaatttgtgaaaataaggttcc 14130163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 20693876 - 20693797
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||||||||| ||   ||||| ||||||||||| || ||||||||||||||||||| ||||||||||| ||||||    
T  20693876 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaatttgtgaaaatatggttcc 20693797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 42891109 - 42891168
Alignment:
Q  275 ggttccacagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 334  Q
    |||| ||||||||| ||||||||||| |||||  ||||||||||||||||||||| ||||    
T  42891109 ggtttcacagacgtcggaaacgcttcggtcgtacgagcaacgtcgatctcctctttcaac 42891168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 2609547 - 2609584
Alignment:
Q  241 aacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||||||| |||||||||||||||||||||||    
T  2609547 aacaagtttgcaagtgacaaacttgtgaaaatagggtt 2609584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 23571151 - 23571093
Alignment:
Q  275 ggttccacagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 334  Q
    ||||||||| |||| |||||||||||||||||| ||| | ||||||||||||||| ||||    
T  23571151 ggttccaca-acgtcggaaacgcttcagtcgtccgagaagcgtcgatctcctctttcaac 23571093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 18180714 - 18180750
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac 228  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  18180714 gacgcagtacggaagcgtaggctagcaagcgctaaac 18180750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 31915637 - 31915548
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaact-agattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||| ||||| |||||| |||||||||||||||||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||    
T  31915637 gacgtagtacggaagcgcaggctagcaagcactaaacttaggttgaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 31915548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 8931308 - 8931220
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  8931308 gacgcagtacggaagcgtagggttagcaagcgctaaacctagattgaaaaaaacaagtttgcaagcgataaacttgtgaaaatagggtt 8931220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 12944192 - 12944115
Alignment:
Q  204 aagcgtaggctagcaagcactaaa-ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||    
T  12944192 aagcgtaggctagcaagcgctaaatctagattgaaaagaaacaagtttgcaaacgacaaacttgtaaaaatagggttc 12944115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 50857445 - 50857533
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  50857445 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgtaagcgacaaacttgtgaaaatagggtt 50857533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 13444015 - 13444074
Alignment:
Q  217 caagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 275  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  13444015 caagcactaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 13444074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 28660758 - 28660837
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||||||| |||||| | |||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||    
T  28660758 gaagcgtaggatagcaaacgctaaacctagatagataagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 28660837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 31913454 - 31913375
Alignment:
Q  202 agaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||| ||||||||||||| |||||| ||| ||||||  |||||||||||||||||||||||||| |||||||| ||||    
T  31913454 agaagcataggctagcaagcgctaaacctaggttgaaagaaacaagtttgcaagcgacaaacttgtaaaaataggtttcc 31913375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 9031094 - 9031017
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||||||||||| ||||||| || ||||||||| || |||||||||||| | |||||| |||||||||||||    
T  9031094 gaagcgtaggctagcaagtactaaacctatattgaaaaggaataagtttgcaagcaataaacttatgaaaatagggtt 9031017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 40058103 - 40058184
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaa 271  Q
    ||||| |||| |||||||||||||||||||| |||| ||| || |||||| || ||||||||||||||||||||| ||||||    
T  40058103 gacgcggtacggaagcgtaggctagcaagcagtaaacctaaatagaaaagaaataagtttgcaagcgacaaacttatgaaaa 40058184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 50713786 - 50713713
Alignment:
Q  207 cgtaggctagcaagcactaaac-tagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||||| ||| | |||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  50713786 cgtaggctaacaaccgctaaacctagattgaaaagagacaagttcgcaggcgacaaacttgtgaaaatagggtt 50713713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 10927234 - 10927199
Alignment:
Q  236 aaaagaacaagtttgcaagcgacaaacttgtgaaaa 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  10927234 aaaagaacaagtttgcaagcgacaaacttgtgaaaa 10927199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 43681535 - 43681465
Alignment:
Q  207 cgtaggctagcaagcactaaac-tagattgaaaagaa--caagtttgcaagcgacaaacttgtgaaaatag 274  Q
    |||| |||||||||| |||||| ||||||||||| ||  ||||||||||||||||||| ||||||||||||    
T  43681535 cgtatgctagcaagcgctaaacctagattgaaaaaaaaacaagtttgcaagcgacaaatttgtgaaaatag 43681465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 10925814 - 10925739
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||| |||||||||||| |||||| || ||||||||  |||| |||||||||||||||||||| |||||| |||||    
T  10925814 gaagcggaggctagcaagcgctaaacctaaattgaaaa--acaattttgcaagcgacaaacttgtaaaaatatggttc 10925739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 10928366 - 10928289
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||||||||||||||  |||||| |||||| |||||| | ||||||| ||| |||||||||||||||||| ||||    
T  10928366 gaagcgtaggctagcaagtgctaaacctagattaaaaagatataagtttgtaagtgacaaacttgtgaaaataaggtt 10928289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 13443411 - 13443464
Alignment:
Q  281 acagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 334  Q
    ||||| |||| ||||||||| |||||| ||||||||||||||||||||| ||||    
T  13443411 acagatgttgaaaacgcttcggtcgtcagagcaacgtcgatctcctctttcaac 13443464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 28661080 - 28661157
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||||||||||||||  |||||| || ||||| ||||| ||||||||||||||| |||| ||| |||||||||||    
T  28661080 gaagcgtaggctagcaagtgctaaacctaaattgataagaaacaagtttgcaagcgaaaaacctgtaaaaatagggtt 28661157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 33152757 - 33152810
Alignment:
Q  228 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||||||||| ||||||||||||||||||||||  || |||||||||||    
T  33152757 ctagattgaaaagaaacaagtttgcaagcgacaaacttacgacaatagggttcc 33152810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 23987653 - 23987581
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaata 273  Q
    |||||||||| |||||||| || ||| ||||| ||||| |||||| ||||||| |||||||||||||||||||    
T  23987653 gaagcgtagggtagcaagcgctgaacctagatagaaaaagaacaactttgcaaacgacaaacttgtgaaaata 23987581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 239764 - 239685
Alignment:
Q  203 gaagcgtaggctagcaagcactaaact-agattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||||||||||||  ||||||| | ||| ||||||| |||||| ||||||| |||| || |||||||||||||||    
T  239764 gaagcgtaggctagcaagggctaaacttatattaaaaagaaacaagttagcaagcgtcaaatttatgaaaatagggttcc 239685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 8221562 - 8221487
Alignment:
Q  206 gcgtaggctagcaagcactaaacta-gattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||||||||| ||  |||||| | ||||||| ||| |||||||||||| |||||||||| ||||||||||||||    
T  8221562 gcgtaggctagctagtgctaaaccaagattgaatagagacaagtttgcaaacgacaaacttatgaaaatagggttc 8221487  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 8967850 - 8967896
Alignment:
Q  235 gaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    |||||||||||||||||||  ||||||| | ||||||||||||||||    
T  8967850 gaaaagaacaagtttgcaaatgacaaacctatgaaaatagggttcca 8967896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 26981561 - 26981516
Alignment:
Q  228 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 273  Q
    |||||||||||  ||||||||||||||||| |||||||| ||||||    
T  26981561 ctagattgaaagaaacaagtttgcaagcgaaaaacttgtaaaaata 26981516  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 13882687 - 13882775
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13882687 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 13882775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 5934691 - 5934607
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagg 275  Q
    |||||||| ||||||||||||||||||||| |||||| |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  5934691 gacgcagt-cagaagcgtaggctagcaagcgctaaacctagattgaaaagaaacaaatttgcaagcgacaaacttgtgaaaatagg 5934607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 13886160 - 13886245
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 275  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  13886160 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 13886245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 30217898 - 30217814
Alignment:
Q  195 gcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||| |||||||||||||||||||| |||||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  30217898 gcagtatagaagcgtaggctagcaagcgctaaacctagattgaaa-gaacaagttcgcaagcgacaaacttgtgaaaatagagttc 30217814  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 859157 - 859245
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||| ||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  859157 gacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 859245  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 1217161 - 1217249
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||| ||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1217161 gacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 1217249  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 3778721 - 3778799
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||||||  |||||||||||  |||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  3778721 gaagcgtaggctgacaagcactaaatatagattgaaatgaacaagtttgcaagcgagaaacttgtgaaaatagggttcc 3778799  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 4888687 - 4888776
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||| ||| |||||||||||||||| || || ||| ||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  4888687 gacgcaatacggaagcgtaggctagcatgcgctgaacctagatagaaaagaacaagtttgcaagcgacaaacctgtgaaaatagagttcc 4888776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 1883565 - 1883486
Alignment:
Q  204 aagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    ||||||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  1883565 aagcgtatgctagcaaacactaaacctagattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataaggttcca 1883486  T

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Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 27309638 - 27309705
Alignment:
Q  214 tagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27309638 tagcaagcgctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttc 27309705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 11000838 - 11000916
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||| |||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  11000838 gaagtgtaggctagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacaaactagtgaaaatagggttc 11000916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 281
Target Start/End: Complemental strand, 1365742 - 1365669
Alignment:
Q  209 taggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    ||||||||||||| |||||| |||||||||| ||||||||||| ||||||  ||||||||||||||||||||||    
T  1365742 taggctagcaagcgctaaacctagattgaaaggaacaagtttgtaagcgatgaacttgtgaaaatagggttcca 1365669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 24840194 - 24840141
Alignment:
Q  228 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24840194 ctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 24840141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 27142717 - 27142664
Alignment:
Q  228 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27142717 ctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 27142664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 1369882 - 1369803
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||| ||||||||||||  ||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  1369882 gaagcggaggctagcaagcgttaaacctagattgaaaagaaacaagtttgcaagcgataaacttgttaaaatagggttcc 1369803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 1874626 - 1874537
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||| ||||| |||||||| | |||||| |||||||| | |||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  1874626 gacgtagtacggaagcgtatgttagcaaacactaaaccttgattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataaggttc 1874537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 1220446 - 1220529
Alignment:
Q  197 agtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||||||||| | ||||| | |||||| || || |||| |||||||||||||| ||||||||||||||||||||||||    
T  1220446 agtacagaagcgtagggttagcaaacgctaaacctacatagaaatgaacaagtttgcaaacgacaaacttgtgaaaatagggtt 1220529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 1753640 - 1753690
Alignment:
Q  232 attgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  1753640 attgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagagttcca 1753690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 8063842 - 8063885
Alignment:
Q  228 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaa 271  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  8063842 ctagattgaaaagaacaagtttgcaagcgataaatttgtgaaaa 8063885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 4133286 - 4133364
Alignment:
Q  203 gaagcgtaggctagcaagcactaaact-agattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||||||||||||||   ||||||| |||||||| | |||||| ||| |||||||||||||||||||||||| ||||    
T  4133286 gaagcgtaggctagcaaatgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttc 4133364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 7803032 - 7803122
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||||||| |||||||||| |||||||   ||||| ||| | |||||||| ||||||||||||| |||||||| |||||||| ||||||    
T  7803032 gacgcagtacggaagcgtaggttagcaagggttaaacctaggtcgaaaagaaacaagtttgcaagcaacaaacttatgaaaataaggttcc 7803122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 11229032 - 11228978
Alignment:
Q  228 ctagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||    
T  11229032 ctagattgaaaaagaacaagtttgcaggcgacaaacgtgtgaaaaaagggttcca 11228978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 1786725 - 1786680
Alignment:
Q  236 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    |||| |||||||||||||||||||||| || |||||||||||||||    
T  1786725 aaaataacaagtttgcaagcgacaaacatgcgaaaatagggttcca 1786680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 6451762 - 6451839
Alignment:
Q  203 gaagcgtaggctagcaagcactaaa-ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||| | |||| ||||| ||||| ||||||||||| ||| |||||||||||||||||||| |||||||||| ||||    
T  6451762 gaagcgaaagctatcaagcgctaaatctagattgaaaggaaacaagtttgcaagcgacaaacctgtgaaaataaggtt 6451839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 13466812 - 13466729
Alignment:
Q  199 tacagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||||| |||| ||||||||| |||||| || ||| ||||||| |||||||||||   |||||||| |||||||||||||||    
T  13466812 tacagaagagtagcctagcaagcgctaaacctatattaaaaagaaacaagtttgcaaaaaacaaacttatgaaaatagggttcc 13466729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 35814937 - 35814870
Alignment:
Q  213 ctagcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    ||||||| ||||||| |||||||||||  | ||| |||||||||||||||||||| |||||| |||||    
T  35814937 ctagcaaacactaaatctagattgaaagaaccaactttgcaagcgacaaacttgtaaaaataaggttc 35814870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 11228758 - 11228720
Alignment:
Q  241 aacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  11228758 aacaagtttggaagcgacaaacttgtggaaatagggttc 11228720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 8916379 - 8916467
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||||| |||||||||| ||||| ||||  ||||| |||||| |||| |||||||||||||| ||| ||||||||| |||||| ||||    
T  8916379 gacgcagt-cagaagcgtatgctagtaagcgttaaacctagatttaaaatgaacaagtttgcaaacgataaacttgtggaaatagagttc 8916467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 275
Target Start/End: Original strand, 13886245 - 13886274
Alignment:
Q  246 gtttgcaagcgacaaacttgtgaaaatagg 275  Q
    ||||||||||||||||||||||||||||||    
T  13886245 gtttgcaagcgacaaacttgtgaaaatagg 13886274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 3536122 - 3536034
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3536122 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 3536034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 3542333 - 3542245
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  3542333 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgtaagcgacaaacttgtgaaaatagggtt 3542245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 11659005 - 11658936
Alignment:
Q  206 gcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 274  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  11659005 gcgtaggttagcaagcactaaacctagattgaaaagaacaaatttgcaagcgataaacttgtgaaaatag 11658936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 8048974 - 8049049
Alignment:
Q  199 tacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 273  Q
    |||||||||||||||||||||||| ||| | |||||| ||||||| ||||||||||| ||||||||||||||||||    
T  8048974 tacagaagcgtaggctagcaagcattaatcctagattaaaaagaaaaagtttgcaagtgacaaacttgtgaaaata 8049049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 27822119 - 27822209
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||||||| ||||||||||||||||| | |||||| || || |||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  27822119 gacgcagtacggaagcgtaggctagcaaacgctaaacctaaatagaaaaggaacaagttttcaagcgacaaacttgtgaaaacagggttcc 27822209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 14238507 - 14238434
Alignment:
Q  209 taggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  14238507 taggctagcaaacactaaacataaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaataaggttcc 14238434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 29340810 - 29340895
Alignment:
Q  195 gcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||| |||||||||| | |||| || |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  29340810 gcagtacggaagcgtagggttagcaggcgctaaacctagatagaaaaaaacaagtttgcaagcgacaaacttgtgaaaatagggtt 29340895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 30050004 - 30049920
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 274  Q
    |||||||||| |||||| ||| | ||||||| |||||| || || ||||||||||||||||||||||||||||||||||||||||    
T  30050004 gacgcagtacggaagcgaagggttagcaagcgctaaacctatatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 30049920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 33615505 - 33615593
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||| ||| ||| ||||||||| ||||| | |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  33615505 gacgcattacggaaacgtaggctaacaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 33615593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 30052253 - 30052207
Alignment:
Q  228 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 274  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  30052253 ctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 30052207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 18727184 - 18727115
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaa 271  Q
    ||||||||||||||||| | |||||| |||||||||||  ||||||| ||||||||||||||||||||||    
T  18727184 gaagcgtaggctagcaaacgctaaacctagattgaaaaacacaagttcgcaagcgacaaacttgtgaaaa 18727115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 12882200 - 12882123
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||||| ||||||| |||| ||| |||||||| |||| ||||||||  |||||||||||||||||||||||||||    
T  12882200 gaagcgtagactagcaaacactgaacctagattgagaagagacaagttttaaagcgacaaacttgtgaaaatagggtt 12882123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 18718201 - 18718279
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaa 271  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||||||  |||| || ||||  ||||||||||||||||    
T  18718201 gacgcagtacagaagtgtaggctagcaagcgctaaacctagattgaaaaagacaaattcgcaa--gacaaacttgtgaaaa 18718279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 22889345 - 22889268
Alignment:
Q  195 gcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaa 270  Q
    |||||||||||||||||||||||||||  |||| |||||||||||| | |||||||||||  |||||||||| |||||    
T  22889345 gcagtacagaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaacttatgaaa 22889268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 22910887 - 22910810
Alignment:
Q  195 gcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaa 270  Q
    |||||||||||||||||||||||||||  |||| |||||||||||| | |||||||||||  |||||||||| |||||    
T  22910887 gcagtacagaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaacttatgaaa 22910810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 1127323 - 1127258
Alignment:
Q  211 ggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatag 274  Q
    ||||||| ||| |||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  1127323 ggctagcgagcgctaaacctagattaaaaagaaacaagtttgcaagcgacaaatttgtgaaaatag 1127258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 8047390 - 8047422
Alignment:
Q  193 acgcagtacagaagcgtaggctagcaagcacta 225  Q
    |||||||||||||||||||||||||||||||||    
T  8047390 acgcagtacagaagcgtaggctagcaagcacta 8047422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 22873897 - 22873822
Alignment:
Q  195 gcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaa 270  Q
    ||||||||||  ||||||||||||||   ||||| || |||||||||| ||||||||||| |||||||||||||||||    
T  22873897 gcagtacaga--cgtaggctagcaagtgttaaacctaaattgaaaagagacaagtttgcatgcgacaaacttgtgaaa 22873822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 24443118 - 24443163
Alignment:
Q  236 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    ||||||||| | ||||||||||||||||| | ||||||||||||||    
T  24443118 aaaagaacaggcttgcaagcgacaaacttataaaaatagggttcca 24443163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 33215201 - 33215246
Alignment:
Q  228 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 272  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||||    
T  33215201 ctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 33215246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 5128997 - 5128909
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||||||||||||||||| | |||| || |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5128997 gacgcagtacagaagcgtagggttagcaggcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 5128909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 43303961 - 43304049
Alignment:
Q  192 gacgcagtacagaagcgta-ggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||| || |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43303961 gacgcagtacggaagcgtaaggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 43304049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 43306673 - 43306761
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  43306673 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcaacaaacttgtgaaaatagggtt 43306761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 2472690 - 2472779
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||||  |||||||||||||||||| |||||| || |||||||   |||||||||||| ||||||||||||||||||||||||||    
T  2472690 gacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaagagacaagtttgcaaccgacaaacttgtgaaaatagggttcc 2472779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 3063738 - 3063826
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||||||  ||||||||| | |||||||  ||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||    
T  3063738 gacgcagtacgaaagcgtagggttagcaagcgttaaacctagatagaaaagaaagagtttgcaagcgacaaacttgtgaaaatagggtt 3063826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 3068876 - 3068964
Alignment:
Q  192 gacgcagtacagaagcgta-ggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||||| || |||||||| |||||| ||||| ||||||||||||||||||||  | |||||||| |||||||||||    
T  3068876 gacgcagtacggaagcgtatggttagcaagcgctaaacctagatagaaaagaacaagtttgcaaggaaaaaacttgtaaaaatagggtt 3068964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 43306216 - 43306275
Alignment:
Q  275 ggttccacagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 334  Q
    |||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||    
T  43306216 ggtttcacagacgtcggaaacgcttcggtcgtccgagcaacgtcgatctcctctttcaac 43306275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 365594 - 365682
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||| ||| ||||||||||||||||| | |||||| || |  ||||| ||||| ||  |||||||||||||||||||||||||||||    
T  365594 gacgcattacggaagcgtaggctagcaaacgctaaacctaaaaagaaaataacaaattcccaagcgacaaacttgtgaaaatagggttc 365682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 33175912 - 33175832
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    ||||||||||||||||| |  ||||| || |||||||||| ||||||||||||  ||||||||| ||||||||||||||||    
T  33175912 gaagcgtaggctagcaaacgataaacctatattgaaaagagacaagtttgcaaaggacaaacttatgaaaatagggttcca 33175832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 52708921 - 52708841
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    |||||||||| || ||||| |||||| ||||| ||||| |||||| ||||||||||| |||||||||||| ||||||||||    
T  52708921 gaagcgtaggttaacaagcgctaaacctagatagaaaaagaacaaatttgcaagcgataaacttgtgaaagtagggttcca 52708841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 45168358 - 45168401
Alignment:
Q  228 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaa 271  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  45168358 ctagattgaaataaacaagtttgcaagcgacaaacttgtgaaaa 45168401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 21848965 - 21849054
Alignment:
Q  191 cgacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||||||| |||||||||| | ||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21848965 cgacgcagtacggaagcgtagggttagcaagcgccaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 21849054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 19497351 - 19497395
Alignment:
Q  236 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19497351 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 19497395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 40778787 - 40778875
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||| |||||| ||| | | ||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  40778787 gacgcagtacggaagcgcagggttaacaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtaaaaatagggtt 40778875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 492638 - 492567
Alignment:
Q  209 taggctagcaagcactaaact-agattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    ||||||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  492638 taggctagcaagcgctaaatttagattgaaaagaaacaagtttgcaagcgacaaacttgtgaagatagggtt 492567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 22440934 - 22440855
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    ||||||||||||||||||  |||||| ||||| |||||||||| ||| ||||||||||||||| ||| ||||||||||||    
T  22440934 gaagcgtaggctagcaagtgctaaacctagatagaaaagaacatgttcgcaagcgacaaacttatgataatagggttcca 22440855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 18252455 - 18252415
Alignment:
Q  239 agaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  18252455 agaacaagtttgcaagcgacaaacctgtgaaaatagggttc 18252415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 26140420 - 26140342
Alignment:
Q  203 gaagcgtaggctagcaagcactaaa-ctagattgaaa-agaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    ||||| |||| |||||| | ||||| ||||||||||| | |||||| ||||||||||||||||| ||||||||||||||    
T  26140420 gaagcataggttagcaaacgctaaatctagattgaaagaaaacaagattgcaagcgacaaacttatgaaaatagggttc 26140342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 9868447 - 9868496
Alignment:
Q  232 attgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  9868447 attgaaaagaaacaagtttacaagcaacaaacttgtgaaaatagggttcc 9868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 37786 - 37714
Alignment:
Q  204 aagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 275  Q
    ||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  37786 aagcgtaagctagaaagcgctaaacctagattgaaaagaacaagtttgcaagcgacaaacttatgaaaatagg 37714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 49372 - 49319
Alignment:
Q  228 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 281  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  49372 ctagattgagaagaacaagtttgcaagcgacaaacttatgaaaatagggttcca 49319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 10740 - 10663
Alignment:
Q  195 gcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaa 270  Q
    |||||||||||||||||||||||||||  |||| |||||||||||| | |||||||||||  |||||||||| |||||    
T  10740 gcagtacagaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaacttatgaaa 10663  T

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Target: scaffold0531 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 11597 - 11672
Alignment:
Q  199 tacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 273  Q
    |||||||||||||||||||||||| ||| | |||||| ||||||| ||||||||||| ||||||||||||||||||    
T  11597 tacagaagcgtaggctagcaagcattaatcctagattaaaaagaaaaagtttgcaagtgacaaacttgtgaaaata 11672  T

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Target: scaffold0251 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 9791 - 9700
Alignment:
Q  192 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgac--aaacttgtgaaaatagggttcc 280  Q
    |||||| || ||||||||| ||||||||||  ||||| ||||||||||||||||||||| ||||||||  | ||||||||||||||||||||    
T  9791 gacgcattatagaagcgtatgctagcaagcggtaaacctagattgaaaagaacaagtttccaagcgactaacacttgtgaaaatagggttcc 9700  T

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Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 46734 - 46806
Alignment:
Q  192 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaac 262  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  46734 gacgcagtacggaagcgtagggtgagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaac 46806  T

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Target: scaffold0110; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 45310 - 45351
Alignment:
Q  237 aaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 278  Q
    |||||||||||||||||||||||||||| |||||||| ||||    
T  45310 aaagaacaagtttgcaagcgacaaacttatgaaaataaggtt 45351  T

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Target: scaffold0240 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 14924 - 14850
Alignment:
Q  202 agaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 275  Q
    |||||||||||||||||||| |||||| | ||||||||  || ||||| |||||||| |||||||||||||||||    
T  14924 agaagcgtaggctagcaagcgctaaaccttgattgaaataaataagttggcaagcgaaaaacttgtgaaaatagg 14850  T

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Target: scaffold0240; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 1725 - 1657
Alignment:
Q  212 gctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    ||||||||||  ||||| ||||||||||  ||||||||||||| |||||||||||| |||||| |||||    
T  1725 gctagcaagcgttaaacctagattgaaagaaacaagtttgcaaacgacaaacttgtcaaaatatggttc 1657  T

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Target: scaffold0240; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 16119 - 16051
Alignment:
Q  207 cgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 274  Q
    ||||||||| ||||  |||||| ||||| |||||||||||||||||||| ||||||| | |||||||||    
T  16119 cgtaggctaacaagtgctaaacctagatagaaaagaacaagtttgcaagtgacaaacatctgaaaatag 16051  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 145811 - 145733
Alignment:
Q  203 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    |||| ||| |||||||| | |||||| ||||||||||| || |||||||||||||||||| ||||| ||||||||||||    
T  145811 gaagtgtaagctagcaatcgctaaacctagattgaaaaaaatcaagtttgcaagcgacaagcttgtaaaaatagggttc 145733  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 16473 - 16396
Alignment:
Q  204 aagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 280  Q
    ||||||||| ||| || |||||||| |||||| |||| ||  ||||||||||||||||||||| |||||||| |||||    
T  16473 aagcgtaggttagtaaacactaaacctagattaaaaaaaatgagtttgcaagcgacaaacttgagaaaatagagttcc 16396  T

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Target: scaffold0330 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 17707 - 17639
Alignment:
Q  212 gctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 279  Q
    ||||||||||  ||||| ||||||||||  ||||||||||||| |||||||||||| |||||| |||||    
T  17707 gctagcaagcgttaaacctagattgaaagaaacaagtttgcaaacgacaaacttgtcaaaatatggttc 17639  T

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