View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_7 (Length: 632)

Name: NF0908_low_7
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_7
NF0908_low_7
[»] chr2 (11 HSPs)
chr2 (122-569)||(15089176-15089605)
chr2 (122-457)||(14461868-14462208)
chr2 (185-356)||(14815526-14815697)
chr2 (348-477)||(14816112-14816241)
chr2 (339-434)||(4259516-4259611)
chr2 (489-603)||(14816314-14816420)
chr2 (497-603)||(14462309-14462415)
chr2 (533-603)||(14127950-14128020)
chr2 (344-434)||(14128179-14128269)
chr2 (535-603)||(4259286-4259354)
chr2 (85-124)||(15089086-15089125)
[»] scaffold0001 (2 HSPs)
scaffold0001 (230-477)||(67872-68119)
scaffold0001 (489-588)||(67700-67799)
[»] chr7 (5 HSPs)
chr7 (155-468)||(36714009-36714326)
chr7 (122-477)||(6650990-6651349)
chr7 (489-603)||(6066860-6066974)
chr7 (490-591)||(6650815-6650916)
chr7 (542-600)||(36713898-36713956)
[»] chr8 (6 HSPs)
chr8 (213-477)||(33468475-33468737)
chr8 (533-601)||(4780501-4780569)
chr8 (213-269)||(4780857-4780913)
chr8 (558-603)||(20086310-20086355)
chr8 (362-434)||(4780729-4780801)
chr8 (540-603)||(33468346-33468407)
[»] chr5 (8 HSPs)
chr5 (153-477)||(14050444-14050770)
chr5 (129-434)||(34152246-34152554)
chr5 (378-477)||(41695754-41695853)
chr5 (540-603)||(14050896-14050959)
chr5 (253-477)||(15567477-15567698)
chr5 (489-594)||(41695926-41696035)
chr5 (533-564)||(34152056-34152087)
chr5 (214-267)||(34579603-34579656)
[»] chr4 (9 HSPs)
chr4 (296-477)||(41972993-41973175)
chr4 (332-476)||(4049566-4049710)
chr4 (276-477)||(15993255-15993456)
chr4 (489-603)||(41973248-41973363)
chr4 (489-597)||(4049784-4049892)
chr4 (165-241)||(41972903-41972982)
chr4 (527-603)||(54089594-54089670)
chr4 (540-602)||(23228414-23228476)
chr4 (540-596)||(15993954-15994009)
[»] chr3 (7 HSPs)
chr3 (217-473)||(29540874-29541124)
chr3 (488-603)||(27856492-27856607)
chr3 (232-461)||(27856688-27856917)
chr3 (129-242)||(29541130-29541243)
chr3 (293-434)||(35544375-35544515)
chr3 (338-434)||(8966886-8966976)
chr3 (337-434)||(28728050-28728147)
[»] chr1 (4 HSPs)
chr1 (332-434)||(18285529-18285631)
chr1 (533-603)||(18285792-18285862)
chr1 (337-434)||(1190771-1190868)
chr1 (540-603)||(46482040-46482103)
[»] scaffold0495 (1 HSPs)
scaffold0495 (540-603)||(7861-7924)
[»] chr6 (6 HSPs)
chr6 (540-603)||(10231138-10231201)
chr6 (490-603)||(31826766-31826879)
chr6 (489-573)||(9244592-9244676)
chr6 (363-434)||(31826996-31827067)
chr6 (540-603)||(12150849-12150912)
chr6 (533-603)||(18506312-18506382)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 122 - 569
Target Start/End: Original strand, 15089176 - 15089605
Alignment:
Q  122 ggcgtatgagattgtttgcatgagaggatgggttggtgagggagtgtatggaacagttgtcacttgt---tttgcaggtttgtgttaccgataagtggat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||| |    
T  15089176 ggcgtatgagattgtttgcatgagaggatgggttggtgagggagtgtatggagcagttgtcacttgttgttttgcaggtttgtgttaccgataagtggtt 15089275  T
Q  219 ttggaagctttattcttcccatcaatacacggttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgttatg 318  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| ||    
T  15089276 ttggaagctttattcttcccatcgatacacggttaaaagtgcttataatctttcgataacttctgaagttggtgttgatgaacgttttaatcatgttttg 15089375  T
Q  319 tggcttnnnnnnnttccacttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttgg 418  Q
    ||||||       ||||    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||                 ||||    
T  15089376 tggcttaaaaaaattcc----aaggtcaatatttttatttgacgtttgttccttaatatattagcaacaaaaatgaatc-----------------ttgg 15089454  T
Q  419 attataatgattctttatgcacgactacttatggcatggtggatgatcaataccatttgagcatattacccatggttcgttaattgagcattttactcaa 518  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15089455 attacaatgattctttatgcacgactacttatggcatggtggatgatcaataccatttgagcatattacccatggttcgttaattgagcattttactcag 15089554  T
Q  519 tttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacata 569  Q
    |||  |||||||||||| |||||||||||||||||||| ||||||||||||    
T  15089555 tttagaagtctcgagggcttctccaacaagtctcgtttaacttttaacata 15089605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 122 - 457
Target Start/End: Original strand, 14461868 - 14462208
Alignment:
Q  122 ggcgtatgagattgtttgcatgagaggatgggttggtgagggagtgtatggaacagttgtcactt---gttttgcaggtttg-tgttaccgataagtgga 217  Q
    |||||| ||| |||||||| || ||||| ||||||||||||||||||  ||| ||  ||||||||   |||||| ||||| | ||| || || | |||||    
T  14461868 ggcgtaggagtttgtttgcgtgggaggaagggttggtgagggagtgtgcggagcaactgtcacttattgttttgtaggttggatgtgactgaaatgtgga 14461967  T
Q  218 tttggaagctttattcttcccatcaatacacggttaaaagtgctt-ataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgtta 316  Q
    ||| ||||||| |||||| |||||||||||  || |||||||||| |||||| || || ||||| ||| |||||| |||||||  ||||||||||||||     
T  14461968 tttagaagcttcattctttccatcaatacatagtcaaaagtgctttataatcttttgacaacttttgaggttggtattgatgagtgttttaatcatgttt 14462067  T
Q  317 tgtggcttnnnnnnnttccacttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacatttt 416  Q
    ||||||||       || ||||||||||||||||||||||| |  ||| |||||| |||| |||| | |||||| | ||| |||||||||||||||| ||    
T  14462068 tgtggcttaagcaaatttcacttaaggtcaatatttttatttggtgttcgttcctgaatagattaacgacaaaaattaatttgtttaggagaaacatatt 14462167  T
Q  417 ggattataatgattctttatgcacgactacttatggcatgg 457  Q
    |||||| ||| ||||||| |||||| |||||| ||||||||    
T  14462168 ggattacaattattctttgtgcacggctacttgtggcatgg 14462208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 185 - 356
Target Start/End: Original strand, 14815526 - 14815697
Alignment:
Q  185 ttgttttgcaggtttgtgttaccgataagtggatttggaagctttattcttcccatcaatacacggttaaaagtgcttataatcattggataacttctga 284  Q
    |||||||||||||| |||| || |||| ||||||||||||||||  |||||||||| ||||||| || ||||||||||||||| ||| ||||||||||||    
T  14815526 ttgttttgcaggttggtgtgactgatatgtggatttggaagcttctttcttcccataaatacacagtcaaaagtgcttataattatttgataacttctga 14815625  T
Q  285 agttggtgttgatgaccgttttaatcatgttatgtggcttnnnnnnnttccacttaaggtcaatatttttat 356  Q
    ||||||||| ||||| ||||||||||||||| ||||||||       | |||||||||||||||||||||||    
T  14815626 agttggtgtagatgatcgttttaatcatgttttgtggcttaagcaaataccacttaaggtcaatatttttat 14815697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 348 - 477
Target Start/End: Original strand, 14816112 - 14816241
Alignment:
Q  348 tatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattctttatgcacgactact 447  Q
    |||||||||| | | |||||| || |||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||   |||    
T  14816112 tatttttatttggcatttgtttctgaatagattagtaacaaaaatgaatctgtttaggagaaacattttggattacaatgattctttgtgcacggaaact 14816211  T
Q  448 tatggcatggtggatgatcaataccatttg 477  Q
    | |||||||||||| ||| || ||||||||    
T  14816212 tgtggcatggtggaggattaagaccatttg 14816241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 4259611 - 4259516
Alignment:
Q  339 taaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattcttt 434  Q
    |||||| |||||||||||| | | ||||||||| |||| ||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||    
T  4259611 taaggttaatatttttatttggcatttgttcctgaatagattagcaacaaaaatgaatatgtttaggagaaatatcttggattataatgattcttt 4259516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 489 - 603
Target Start/End: Original strand, 14816314 - 14816420
Alignment:
Q  489 catggttcgttaattgagcattttactcaatttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttcttt 588  Q
    |||||||| |||||||||||||||| ||| ||||        ||||| || |||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  14816314 catggttcattaattgagcattttattcagtttg--------gagggcttttccaacaaatctcgtttggcttttaacataatttggatttcagttcttt 14816405  T
Q  589 ttattatttggaagg 603  Q
    |||||||||||||||    
T  14816406 ttattatttggaagg 14816420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 497 - 603
Target Start/End: Original strand, 14462309 - 14462415
Alignment:
Q  497 gttaattgagcattttactcaatttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatt 596  Q
    |||||||||||||| |||||| |||| | |||||| | | || |||||||||||||||| || ||||||||| ||||| |||| |||||||||| |||||    
T  14462309 gttaattgagcattctactcagtttggaggtctcgggagcttttccaacaagtctcgttcgaattttaacattatttggatttgagttctttttcttatt 14462408  T
Q  597 tggaagg 603  Q
    |||||||    
T  14462409 tggaagg 14462415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 533 - 603
Target Start/End: Complemental strand, 14128020 - 14127950
Alignment:
Q  533 gggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    ||||||||||||||||||||||||  ||||||| || ||||| ||||||| |||||||| |||||||||||    
T  14128020 gggtttctccaacaagtctcgtttatcttttaatatcatttggatttcagctctttttactatttggaagg 14127950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 344 - 434
Target Start/End: Complemental strand, 14128269 - 14128179
Alignment:
Q  344 tcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattcttt 434  Q
    |||||||||||||| |  |||||||||  |||| ||||||||| ||  ||||||| ||||||||||| || ||||||||||||||||||||    
T  14128269 tcaatatttttatttggtgtttgttccagaataaattagcaactaagatgaatctctttaggagaaatatcttggattataatgattcttt 14128179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 535 - 603
Target Start/End: Complemental strand, 4259354 - 4259286
Alignment:
Q  535 gtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||  | |||||| ||||| |||||    
T  4259354 gtttctccaacaagtcacgtttgacttttaacattatttggatttcaactttttttactatttagaagg 4259286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 15089086 - 15089125
Alignment:
Q  85 ggatgtcgaataatattattagatgggtgggggatggggc 124  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  15089086 ggatgtcggataatgttattagatgggtgggggatggggc 15089125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 230 - 477
Target Start/End: Complemental strand, 68119 - 67872
Alignment:
Q  230 attcttcccatcaatacacggttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgttatgtggcttnnnnn 329  Q
    |||||||||||| |||||| || |||||||||||||||| ||  |||| ||||||||||  | ||||||||||||||||||||||| ||| ||||         
T  68119 attcttcccatcgatacacagtcaaaagtgcttataatcttttaataatttctgaagttaatattgatgaccgttttaatcatgttttgtagcttaagaa 68020  T
Q  330 nnttccacttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgat 429  Q
      ||||||||||| |||||| ||||| | | ||||||||| | | || ||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  68019 aattccacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggattataatgat 67920  T
Q  430 tctttatgcacgactacttatggcatggtggatgatcaataccatttg 477  Q
    ||||| |||||| |||||| ||||||||| || |||||| ||||||||    
T  67919 tctttgtgcacggctacttgtggcatggtagaggatcaagaccatttg 67872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 489 - 588
Target Start/End: Complemental strand, 67799 - 67700
Alignment:
Q  489 catggttcgttaattgagcattttactcaatttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttcttt 588  Q
    ||||||| ||||||||||||||||||||| |||| | |||| |  || || | || |||||||  |||| |||||||||||||||||||||| |||||||    
T  67799 catggtttgttaattgagcattttactcagtttggaggtcttggaggatttttcatcaagtcttatttggcttttaacataatttgaatttctgttcttt 67700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 1e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 155 - 468
Target Start/End: Complemental strand, 36714326 - 36714009
Alignment:
Q  155 tggtgagggagtgtatggaacagttgtcacttgtt---ttgcaggtttgtgttaccgataagtggatttggaagctttattcttcccat--caatacacg 249  Q
    |||||||||||| |  ||||||| |||||||||||   ||| ||||| ||||  | ||||  || ||||||||| || |||||||||||  | ||| ||     
T  36714326 tggtgagggagtctgcggaacagctgtcacttgttgttttgtaggttggtgtggctgatagatgaatttggaagtttcattcttcccatatcgataaaca 36714227  T
Q  250 gttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgttatgtggcttnnnnnnnttccacttaaggtcaata 349  Q
    || |||| ||||| ||||| || || ||||| | || ||||||||||||||||||||||||||||| ||||||||       ||| |||||| |||||||    
T  36714226 gtcaaaaatgcttgtaatcttttgacaacttttaaaattggtgttgatgaccgttttaatcatgttttgtggcttaagcaaattcgacttaatgtcaata 36714127  T
Q  350 tttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattctttatgcacgactactta 449  Q
    |||||||  ||||||||||||| |||| |||||||||||||| ||||  |||||||||||| ||||||||||| ||||||||||| |||||||||||||     
T  36714126 tttttatctgacgtttgttcctaaatagattagcaacaaaat-gaataagtttaggagaaatattttggattacaatgattctttgtgcacgactacttg 36714028  T
Q  450 tggcatggtggatgatcaa 468  Q
    |||||| ||||| ||||||    
T  36714027 tggcattgtggaggatcaa 36714009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 122 - 477
Target Start/End: Complemental strand, 6651349 - 6650990
Alignment:
Q  122 ggcgtatgagattgtttgcatgagaggatgggttggtgagggagtgtatggaacagttgtcacttgtt---ttgcaggtttgtgttaccgataagtggat 218  Q
    |||||| ||||| |||||||||  ||||  ||||| |||||||||||| ||| ||  |||||||||||   ||| || || |||| || || |  |||||    
T  6651349 ggcgtaggagatcgtttgcatggaaggaatggttgatgagggagtgtacggagcaactgtcacttgttgttttgtagattggtgtgactgacagatggat 6651250  T
Q  219 ttggaagctttattcttcccatcaatacacggttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgttatg 318  Q
    ||  |||||| ||||||||||||  || || || ||||||||||||||||||| || || |||||||||| | |||||||||| ||||||||||||| ||    
T  6651249 ttaaaagcttcattcttcccatcggtatacagtcaaaagtgcttataatcatttgacaaattctgaagtttgagttgatgaccattttaatcatgttttg 6651150  T
Q  319 tggcttnnnnnnnttccacttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttgg 418  Q
    || |||       |||| |||||||| |||||||||||| | | |||||| || |||| ||||| ||| ||| ||||| ||||||||||| || ||||||    
T  6651149 tgccttaagcaaattcctcttaaggtgaatatttttatttggcttttgtttctgaataaattagtaactaaaatgaatttgtttaggagatactttttgg 6651050  T
Q  419 attataatgattc-tttatgcacgactacttatggcatggtggatgatcaataccatttg 477  Q
    |||| |||||||| ||||||||||  ||||| ||||  |||||| |||||||||||||||    
T  6651049 attacaatgattcttttatgcacgggtacttgtggctgggtggaggatcaataccatttg 6650990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 489 - 603
Target Start/End: Complemental strand, 6066974 - 6066860
Alignment:
Q  489 catggttcgttaattgagcattttactcaatttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttcttt 588  Q
    ||||||||||||||||||||| ||||||| |||| | |||| | ||| || ||||||||||||||||||||||||||||||||||| ||||||  |||||    
T  6066974 catggttcgttaattgagcatcttactcagtttggaggtcttgggggcttttccaacaagtctcgtttgacttttaacataatttggatttcaactcttt 6066875  T
Q  589 ttattatttggaagg 603  Q
    |||||| ||||||||    
T  6066874 ttattacttggaagg 6066860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 490 - 591
Target Start/End: Complemental strand, 6650916 - 6650815
Alignment:
Q  490 atggttcgttaattgagcattttactcaatttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttctttt 589  Q
    ||||||| ||||||||| |||||| ||| |||| | |||| |  || || ||||| ||| ||||||||||||||||||||||||||||||| ||||||||    
T  6650916 atggttcattaattgagtattttattcagtttggaggtcttggaggcttttccaataagcctcgtttgacttttaacataatttgaatttctgttctttt 6650817  T
Q  590 ta 591  Q
    ||    
T  6650816 ta 6650815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 600
Target Start/End: Complemental strand, 36713956 - 36713898
Alignment:
Q  542 caacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttgga 600  Q
    |||||||||| ||||| |||||||| ||||||| | |||||||||||||||| ||||||    
T  36713956 caacaagtcttgtttggcttttaacttaatttggacttcagttctttttattgtttgga 36713898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 9e-44; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 213 - 477
Target Start/End: Complemental strand, 33468737 - 33468475
Alignment:
Q  213 gtggatttggaagctttattcttcccatcaatacacggttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcat 312  Q
    |||||||||||||||| |||||||||||| |||||  || |||  ||||||| ||| || || ||||||| || ||| ||||||||||||||||||||||    
T  33468737 gtggatttggaagcttcattcttcccatccatacatagtaaaatatgcttattatcttttgacaacttctaaaattgatgttgatgaccgttttaatcat 33468638  T
Q  313 gttatgtggcttnnnnnnnttccacttaaggtcaatattttt-attcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaac 411  Q
    ||| ||||||||       ||||||||| |  |||||||||| ||| | ||||||||| | |||| ||||| ||||||| ||||||||||||||||||||    
T  33468637 gttttgtggcttaagaaaattccacttacgagcaatattttttatttggcgtttgttcttgaatagattagtaacaaaaatgaatctgtttaggagaaac 33468538  T
Q  412 attttggattataatgattctttatgcacgactacttatggcatggtggatgatcaataccatttg 477  Q
    | ||||||||| ||||||||||| ||||||    ||| ||||| |||||| |||||| ||||||||    
T  33468537 aatttggattacaatgattctttgtgcacg---gcttgtggcacggtggaggatcaagaccatttg 33468475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 601
Target Start/End: Complemental strand, 4780569 - 4780501
Alignment:
Q  533 gggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaa 601  Q
    |||||| |||||||||||||||||||||||||| || ||||| ||||||  |||||||| |||||||||    
T  4780569 gggtttttccaacaagtctcgtttgacttttaatattatttggatttcaactctttttactatttggaa 4780501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 4780913 - 4780857
Alignment:
Q  213 gtggatttggaagctttattcttcccatcaatacacggttaaaagtgcttataatca 269  Q
    |||||||||||||||| ||||||||||| | |||||||| |||||||||||||||||    
T  4780913 gtggatttggaagcttcattcttcccataagtacacggtcaaaagtgcttataatca 4780857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 603
Target Start/End: Original strand, 20086310 - 20086355
Alignment:
Q  558 acttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  20086310 acttttaacataatttggatttcagttctttttattatttgaaagg 20086355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 434
Target Start/End: Complemental strand, 4780801 - 4780729
Alignment:
Q  362 gtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattcttt 434  Q
    |||||||||| |||| || | |||| ||  |||||||||||| ||||||  | ||||||||||||||||||||    
T  4780801 gtttgttcctgaatagatcaacaactaagatgaatctgtttaagagaaatgtcttggattataatgattcttt 4780729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 603
Target Start/End: Complemental strand, 33468407 - 33468346
Alignment:
Q  540 tccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    ||||||||||||| |||| ||||||| |||||||| | |||| |  ||||||||||||||||||    
T  33468407 tccaacaagtctcatttggcttttaatataatttggagttcaat--tttttattatttggaagg 33468346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 153 - 477
Target Start/End: Original strand, 14050444 - 14050770
Alignment:
Q  153 gttggtgagggagtgtatggaacagttgtcacttgtt---ttgcaggtttgtgttaccgataagtggatttggaagctttattcttcccatcaatacacg 249  Q
    |||||||| ||||||| |||| ||| |||||||||||   ||  ||||| |||| || || | ||| |||||||||||| |||||||||||| |||| |     
T  14050444 gttggtgaaggagtgtgtggagcagctgtcacttgttattttataggttggtgtgactgacaggtgaatttggaagcttcattcttcccatcgatactca 14050543  T
Q  250 gtta-aaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgttatgtggcttnnnnnnnttccacttaaggtcaat 348  Q
    || | ||| ||||||||||| || || ||||| |||| |||||||||||||| |||||| ||||||||||||||||       |||||||||||||||||    
T  14050544 gtaataaaatgcttataatcttttgaaaacttgtgaaattggtgttgatgactgttttagtcatgttatgtggcttaagcaaattccacttaaggtcaat 14050643  T
Q  349 atttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattctttatgcacgactactt 448  Q
    |||||| || | ||||||||| | || | |||||||| || | | ||| ||||||| ||||||| ||| ||||| ||||||||||  |||||||||  ||    
T  14050644 atttttgtttggcgtttgttcatgaagagattagcaaaaataat-aatttgtttagaagaaaca-tttagattacaatgattcttagtgcacgactcatt 14050741  T
Q  449 atggcatggtggatgatcaataccatttg 477  Q
    ||| |||  |||| |||||| ||||||||    
T  14050742 atgacatcatggaggatcaagaccatttg 14050770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 129 - 434
Target Start/End: Complemental strand, 34152554 - 34152246
Alignment:
Q  129 gagattgtttgcatgagaggatgggttggtgagggagtgtatggaacagttgtcacttgtt---ttgcaggtttgtgttaccgataagtggatttggaag 225  Q
    |||||||||||| || ||||| | |||||| || ||||||  ||| ||| | |||||||||   ||||||||| |||| |  || | |||||||||||||    
T  34152554 gagattgtttgcgtgggaggaggagttggtaagcgagtgtgcggagcagctttcacttgttgtattgcaggttggtgtgaatgacaggtggatttggaag 34152455  T
Q  226 ctttattcttcccatcaatacacggttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgttatgtggcttn 325  Q
    ||| |||||||| ||   |||||||||||||| |||||||||  || ||  |  || || || |   |||||||| |||  ||||||||| | ||||||     
T  34152454 cttcattcttcctataggtacacggttaaaagcgcttataatattttgactagctcagatgtggaaattgatgactgttgcaatcatgttttatggctta 34152355  T
Q  326 nnnnnnttccacttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataa 425  Q
          |||| ||||||||||||||||||||| |  |||||||||| |||| ||||||||||||  ||||||||||||||||||| || |||||||||||    
T  34152354 agaaaattccgcttaaggtcaatatttttatttggtgtttgttcctgaatagattagcaacaaagatgaatctgtttaggagaaatatcttggattataa 34152255  T
Q  426 tgattcttt 434  Q
    |||||||||    
T  34152254 tgattcttt 34152246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 378 - 477
Target Start/End: Original strand, 41695754 - 41695853
Alignment:
Q  378 attagcaacaaaattgaatctgtttaggagaaacattttggattataatgattctttatgcacgactacttatggcatggtggatgatcaataccatttg 477  Q
    ||||||||||||| |||||||||||||||||||||||||  |||| |||| ||| || |||| | ||| || |||||||||||| |||||| ||||||||    
T  41695754 attagcaacaaaaatgaatctgtttaggagaaacattttttattacaatgtttcattgtgcaaggctatttgtggcatggtggaggatcaaaaccatttg 41695853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 603
Target Start/End: Original strand, 14050896 - 14050959
Alignment:
Q  540 tccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||| ||||    
T  14050896 tccaacaagtctcgtttgacttttaacatgatttggatttaagttctttttgttatttgaaagg 14050959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 253 - 477
Target Start/End: Original strand, 15567477 - 15567698
Alignment:
Q  253 aaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgttatgtggcttnnnnnnnttccacttaaggtcaatattt 352  Q
    |||| ||||||||||| || || ||||||||  |||||| || |||||||||||||||||||| |||||||           |||| ||| |||||||||    
T  15567477 aaaaatgcttataatcttttgacaacttctgcggttggtattaatgaccgttttaatcatgttttgtggctaaaaaaaaa--cactgaagatcaatattt 15567574  T
Q  353 ttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattctttatgcacgactacttatgg 452  Q
    | ||| |  |||| ||||| |||| ||||||||| ||| ||||  ||||||||| ||||||||| ||||| ||||||||||| ||||| |  ||||| ||    
T  15567575 t-atttggtgtttattcctgaataaattagcaactaaaatgaacttgtttaggacaaacattttagattacaatgattctttgtgcacaataacttacgg 15567673  T
Q  453 catggtggatgatcaataccatttg 477  Q
     | |||||| |||||| | ||||||    
T  15567674 taaggtggaggatcaagatcatttg 15567698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 594
Target Start/End: Original strand, 41695926 - 41696035
Alignment:
Q  489 catggttcgttaattgagcattttactcaatttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacataatt----tgaatttcagtt 584  Q
    |||| ||||||| |||||||||||||| | |||| | |||| | ||| || || ||||||||||||| ||||||||| || |||    || |||||||||    
T  41695926 catgtttcgttagttgagcattttacttagtttggaggtcttgggggattttctaacaagtctcgttcgacttttaatatgatttggatggatttcagtt 41696025  T
Q  585 ctttttatta 594  Q
    ||||||||||    
T  41696026 ctttttatta 41696035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 533 - 564
Target Start/End: Complemental strand, 34152087 - 34152056
Alignment:
Q  533 gggtttctccaacaagtctcgtttgactttta 564  Q
    ||||||||||||||||||||||||||||||||    
T  34152087 gggtttctccaacaagtctcgtttgactttta 34152056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 34579603 - 34579656
Alignment:
Q  214 tggatttggaagctttattcttcccatcaatacacggttaaaagtgcttataat 267  Q
    |||||||||||||||||| |||| || || || ||||| |||||||||||||||    
T  34579603 tggatttggaagctttatccttctcaacagtatacggtgaaaagtgcttataat 34579656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 296 - 477
Target Start/End: Original strand, 41972993 - 41973175
Alignment:
Q  296 atgaccgttttaatcatgttatgtggcttnnnnnnnttccacttaaggtcaatatttttattcgacgtt---tgttccttaatatattagcaacaaaatt 392  Q
    ||||||||| |||||||||| |||| |||       |||||||||||||||||||||||||| ||| ||   ||||| | ||||   ||||||||||| |    
T  41972993 atgaccgttataatcatgttttgtgccttaagaaaattccacttaaggtcaatatttttatttgacattatttgttcttgaatag--tagcaacaaaaat 41973090  T
Q  393 gaatctgtttaggagaaacattttggattataatgattctttatgcacgactacttatggcatggtggatgatcaataccatttg 477  Q
    ||||| |||||| |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| | ||||||    
T  41973091 gaatcagtttagtagaaacattttggattataatgatactttgtgcacgactacttgtggcatggtggatgatcaagatcatttg 41973175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 332 - 476
Target Start/End: Original strand, 4049566 - 4049710
Alignment:
Q  332 ttccacttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattc 431  Q
    ||||||||| | ||||||||||||||   ||||| ||||| |||  ||||||||||||| ||||| ||||||| ||||||||||| ||||| ||||||||    
T  4049566 ttccacttaggatcaatatttttattaagcgtttattcctgaatcgattagcaacaaaaatgaatatgtttagaagaaacattttcgattacaatgattc 4049665  T
Q  432 tttatgcacgactacttatggcatggtggatgatcaataccattt 476  Q
    ||| ||||||||||||| |||||||||||| |||||| |||||||    
T  4049666 tttgtgcacgactacttgtggcatggtggaggatcaagaccattt 4049710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 276 - 477
Target Start/End: Original strand, 15993255 - 15993456
Alignment:
Q  276 aacttctgaagttggtgttgatgaccgttttaatcatgttatgtggcttnnnnnnnttccacttaaggtcaatatttttattcgacgtttgttccttaat 375  Q
    ||||||| ||||| | ||||||||||||| || || |||| ||||||||       |||||||||||| ||||||||||||| |  |||||||||| |||    
T  15993255 aacttctaaagttagcgttgatgaccgttctagtcgtgttttgtggcttaagcaaattccacttaaggccaatatttttatttggtgtttgttcctgaat 15993354  T
Q  376 atattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattctttatgcacgactacttatggcatggtggatgatcaataccatt 475  Q
    | ||||| |  ||||   ||| ||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||||||| || |||||| ||||||    
T  15993355 agattagtagtaaaaaataatttgtttaggagaaacattttggattacaatgattctttgtgtacgactacttgtggcatggtagaggatcaaaaccatt 15993454  T
Q  476 tg 477  Q
    ||    
T  15993455 tg 15993456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 489 - 603
Target Start/End: Original strand, 41973248 - 41973363
Alignment:
Q  489 catggttcgtt-aattgagcattttactcaatttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttctt 587  Q
    ||||||||||| |||||||||||||| ||| |||| | |||| |  || || || |||||||||||||||||||||||||||||||| |||| || ||||    
T  41973248 catggttcgtttaattgagcattttattcagtttggaggtcttggaggcttttcaaacaagtctcgtttgacttttaacataatttggatttaagctctt 41973347  T
Q  588 tttattatttggaagg 603  Q
    ||||||||||| ||||    
T  41973348 tttattatttgtaagg 41973363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 489 - 597
Target Start/End: Original strand, 4049784 - 4049892
Alignment:
Q  489 catggttcgttaattgagcattttactcaatttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttcttt 588  Q
    ||||||||||||||||| |||| |||||| |||| | | || |  ||||| |||||||||||||  ||| ||||||||| |||||| ||||||||||||     
T  4049784 catggttcgttaattgaacattctactcagtttggaggccttggaggtttttccaacaagtctctattggcttttaacacaatttggatttcagttcttg 4049883  T
Q  589 ttattattt 597  Q
    |||||||||    
T  4049884 ttattattt 4049892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 41972903 - 41972982
Alignment:
Q  165 gtgtatggaacagttgtcacttgt---tttgcaggtttgtgttaccgataagtggatttggaagctttattcttcccatc 241  Q
    |||| |||| ||||||||||||||   |||||||||| |||| || || | |||||||||||||||| ||||||||||||    
T  41972903 gtgtgtggagcagttgtcacttgttgttttgcaggttcgtgtgactgacatgtggatttggaagcttcattcttcccatc 41972982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 603
Target Start/End: Original strand, 54089594 - 54089670
Alignment:
Q  527 tctcgagggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    |||||| |||||| ||||||| ||||||||||||||||| || ||||| |||  || |||||||| |||||| ||||    
T  54089594 tctcgaaggtttcaccaacaactctcgtttgacttttaatattatttggattgaagctctttttactatttgaaagg 54089670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 23228476 - 23228414
Alignment:
Q  540 tccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaag 602  Q
    ||||| |||||||  ||||||||||||||||| || ||||| || ||||||| ||||||||||    
T  23228476 tccaagaagtctcacttgacttttaacataatatggatttcggtgctttttactatttggaag 23228414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 596
Target Start/End: Original strand, 15993954 - 15994009
Alignment:
Q  540 tccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatt 596  Q
    ||||| ||||||||||||| |||||| |||||||| ||||||||||||  |||||||    
T  15993954 tccaataagtctcgtttga-ttttaaaataatttggatttcagttcttgatattatt 15994009  T

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Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 217 - 473
Target Start/End: Complemental strand, 29541124 - 29540874
Alignment:
Q  217 atttggaagctttattcttcccatcaatacacggttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgtttt-aatcatgtt 315  Q
    ||||||||| || ||||||||||||||||||| |  | ||||||||||| || ||  | |||| |||||| || ||||||||||| |||| || ||||||    
T  29541124 atttggaagattcattcttcccatcaatacacag--acaagtgcttatagtcttttaacaactcctgaagatgatgttgatgaccatttttaaacatgtt 29541027  T
Q  316 atgtggcttnnnnnnnttccacttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattt 415  Q
     ||||||||       |||||||||||||||    ||||||| |  |||||||||| |||| ||||||||||||| || || |||||| |||||||||||    
T  29541026 -tgtggcttaagcgaattccacttaaggtca----ttttatttggtgtttgttcctaaataaattagcaacaaaaatggatatgtttaagagaaacattt 29540932  T
Q  416 tggattataatgattctttatgcacgactacttatggcatggtggatgatcaatacca 473  Q
    | ||||| ||| ||||||| |||||| |||||| |||||||||||| |||||| ||||    
T  29540931 tagattacaataattctttgtgcacggctacttgtggcatggtggaggatcaaaacca 29540874  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 488 - 603
Target Start/End: Complemental strand, 27856607 - 27856492
Alignment:
Q  488 ccatggttcgttaattgagcattttactcaatttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttctt 587  Q
    ||||||||||||||||||||||  ||||||||||| |||||| | |||||| | |||||||||||||||  |||| ||||||||||| |||||| |||||    
T  27856607 ccatggttcgttaattgagcatcgtactcaatttggaagtcttgggggttttttcaacaagtctcgtttagctttaaacataatttggatttcaattctt 27856508  T
Q  588 tttattatttggaagg 603  Q
    |||| ||||| |||||    
T  27856507 tttaatatttcgaagg 27856492  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 232 - 461
Target Start/End: Complemental strand, 27856917 - 27856688
Alignment:
Q  232 tcttcccatcaatacacggttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgttatgtggcttnnnnnnn 331  Q
    |||| |||||| || || || |||| || |||||||| || || ||||| | ||||||| |||||||||| ||||||||||||| ||| ||||           
T  27856917 tctttccatcattataccgtcaaaaatgtttataatcttttgacaacttttaaagttggagttgatgaccattttaatcatgttttgtagcttaagcaaa 27856818  T
Q  332 ttccacttaaggtcaata-tttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgatt 430  Q
    ||||||||||||| |||| |||||||| |  ||||||||| ||||| |||| |||||||| ||||||| |||| || ||| |||| |||||| |||||||    
T  27856817 ttccacttaaggttaatattttttatttggtgtttgttcc-taatagattaacaacaaaaatgaatctttttaagaaaaatatttcggattacaatgatt 27856719  T
Q  431 ctttatgcacgactacttatggcatggtgga 461  Q
    | || |||||| |||||| ||| || |||||    
T  27856718 cattgtgcacggctacttgtggtattgtgga 27856688  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 29541243 - 29541130
Alignment:
Q  129 gagattgtttgcatgagaggatgggttggtgagggagtgtatggaacagttgtcacttgttttgcaggtttgtgttaccgataagtggatttggaagctt 228  Q
    ||||||||| || || ||||| |||||||||||||||||| |||| ||| | ||||||||||||||||||  ||| ||||  | ||| ||||||||| ||    
T  29541243 gagattgttcgcgtgggaggaggggttggtgagggagtgtgtggagcagctatcacttgttttgcaggttgttgtgaccggcatgtgtatttggaagatt 29541144  T
Q  229 tattcttcccatca 242  Q
     |||||||||||||    
T  29541143 cattcttcccatca 29541130  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 293 - 434
Target Start/End: Original strand, 35544375 - 35544515
Alignment:
Q  293 ttgatgaccgttttaatcatgttatgtggcttnnnnnnnttccacttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaatt 392  Q
    ||||||||||||  ||||||||| | ||||||       |||| |||||||| ||||||||| || ||||||||||||| |||| ||||||||| | |      
T  35544375 ttgatgaccgttgcaatcatgttttatggcttaagcaaattccgcttaaggtaaatatttttttttgacgtttgttcctgaatagattagcaactacaaa 35544474  T
Q  393 gaatctgtttaggagaaacattttggattataatgattcttt 434  Q
    | ||| |||||||||||| || |||||||||||| |||||||    
T  35544475 g-atcggtttaggagaaatatcttggattataattattcttt 35544515  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 338 - 434
Target Start/End: Complemental strand, 8966976 - 8966886
Alignment:
Q  338 ttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattcttt 434  Q
    |||||||||||||||||||| | ||||||||||| |||      | ||||||  ||||| |||||||||||||||||||| ||||||||||| ||||    
T  8966976 ttaaggtcaatatttttatttggcgtttgttcctgaat------gaaacaaagatgaatttgtttaggagaaacattttgaattataatgatacttt 8966886  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 434
Target Start/End: Original strand, 28728050 - 28728147
Alignment:
Q  337 cttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattcttt 434  Q
    ||||||||||||||||||||| | ||||||||  | |||| ||||||||| ||  | ||||||||| ||||||| || ||| ||||||| ||||||||    
T  28728050 cttaaggtcaatatttttatttggcgtttgtttttgaatagattagcaactaagataaatctgttttggagaaatatcttgaattataacgattcttt 28728147  T

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Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 332 - 434
Target Start/End: Original strand, 18285529 - 18285631
Alignment:
Q  332 ttccacttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattc 431  Q
    |||| |||||||| |||| ||||||| | |||||||| || |||| ||||||||||||  ||||| ||||||||||||| || |||||||||||||||||    
T  18285529 ttccgcttaaggttaataattttatttgtcgtttgtttctgaatagattagcaacaaagatgaatatgtttaggagaaatatattggattataatgattc 18285628  T
Q  432 ttt 434  Q
    |||    
T  18285629 ttt 18285631  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 533 - 603
Target Start/End: Original strand, 18285792 - 18285862
Alignment:
Q  533 gggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    |||||||||||  ||||||||||||||||||||||| ||||  ||||||| |||||||| |||||||||||    
T  18285792 gggtttctccattaagtctcgtttgacttttaacattatttagatttcagctctttttactatttggaagg 18285862  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 434
Target Start/End: Original strand, 1190771 - 1190868
Alignment:
Q  337 cttaaggtcaatatttttattcgacgtttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattcttt 434  Q
    |||||||| ||||||| |||| ||||||||||||| |||| |||| |||  ||| ||||||| ||||||||||| ||  || ||||||||||||||||    
T  1190771 cttaaggttaatatttgtatttgacgtttgttcctaaatagattaacaattaaaatgaatctatttaggagaaatatcatgaattataatgattcttt 1190868  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 540 - 603
Target Start/End: Original strand, 46482040 - 46482103
Alignment:
Q  540 tccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    |||||||||||||||||||||||||| || |||| |||||||| |||||||| ||||| |||||    
T  46482040 tccaacaagtctcgtttgacttttaatattatttcaatttcagctctttttactatttagaagg 46482103  T

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Target: scaffold0495 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 603
Target Start/End: Original strand, 7861 - 7924
Alignment:
Q  540 tccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    ||||||||| |||||||| |||||||| ||||||| |||||||||| |||||||||||||||||    
T  7861 tccaacaagactcgtttggcttttaacgtaatttggatttcagttcgttttattatttggaagg 7924  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 603
Target Start/End: Original strand, 10231138 - 10231201
Alignment:
Q  540 tccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    ||||||||| |||||||| |||||||| ||||||| |||||||||| |||||||||||||||||    
T  10231138 tccaacaagactcgtttggcttttaacgtaatttggatttcagttcgttttattatttggaagg 10231201  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 603
Target Start/End: Complemental strand, 31826879 - 31826766
Alignment:
Q  490 atggttcgttaattgagcattttactcaatttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttctttt 589  Q
    ||||||| ||| |||||||||||  ||  |||||| |||| |  ||||| ||||||||||||  |||||||||||| || ||||||||||||  ||||||    
T  31826879 atggttccttatttgagcattttcttcggtttgaaggtcttggtggtttttccaacaagtcttatttgacttttaatattatttgaatttcaactctttt 31826780  T
Q  590 tattatttggaagg 603  Q
    ||| || |||||||    
T  31826779 tatgatatggaagg 31826766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 573
Target Start/End: Original strand, 9244592 - 9244676
Alignment:
Q  489 catggttcgttaattgagcattttactcaatttgaaagtctcgagggtttctccaacaagtctcgtttgacttttaacataattt 573  Q
    ||||||||||||||||||||||||| ||| ||||   || | | |||    ||||||||||||||||||||||||||||||||||    
T  9244592 catggttcgttaattgagcattttattcagtttgggggttttgggggccgttccaacaagtctcgtttgacttttaacataattt 9244676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 31827067 - 31826996
Alignment:
Q  363 tttgttccttaatatattagcaacaaaattgaatctgtttaggagaaacattttggattataatgattcttt 434  Q
    ||||||||  |||| ||||||||| ||  ||||| ||||||||||||| ||||||||||||||||| |||||    
T  31827067 tttgttccagaatagattagcaactaagatgaatatgtttaggagaaatattttggattataatgaatcttt 31826996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 603
Target Start/End: Original strand, 12150849 - 12150912
Alignment:
Q  540 tccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    |||||||||||| ||||||||||||| || ||||| ||||||  |||||||| ||| |||||||    
T  12150849 tccaacaagtcttgtttgacttttaatattatttggatttcaactctttttactatatggaagg 12150912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 533 - 603
Target Start/End: Complemental strand, 18506382 - 18506312
Alignment:
Q  533 gggtttctccaacaagtctcgtttgacttttaacataatttgaatttcagttctttttattatttggaagg 603  Q
    |||||| ||||||||||| |||||  ||||||| || ||||| ||||||  |||||||| |||||||||||    
T  18506382 gggtttttccaacaagtcccgtttagcttttaatattatttggatttcaactctttttactatttggaagg 18506312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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