View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0908_low_70 (Length: 348)
Name: NF0908_low_70
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_70 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 8102142 - 8102480
Alignment:
| Q |
9 |
caacaaaatcaatagcgttttccccccaaaaaagtttaatttaacaaaagaaagactagaacatcgttaatttactacggattacaacacacaaattcaa |
108 |
Q |
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||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
8102142 |
caacataatcaatagcgttttccccg-aaaaaagttttatttaacaaaagaaagactagaacatcgttaatttattatggattacaacacacaaattcaa |
8102240 |
T |
|
| Q |
109 |
gaatatgaactaaaatagtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagtccatgaaaacaggatcatttcccattgcctcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8102241 |
gaatatgaactaaaatagtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagttcatgaaaacaggatcatttcccattgcctcc |
8102340 |
T |
|
| Q |
209 |
aaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttccactgcgaactg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8102341 |
aaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttccactgcgaactg |
8102440 |
T |
|
| Q |
309 |
ccactggttttccccatccaaaattattgccataaacatc |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
8102441 |
ccactggttttccccatccaaaattattgccataaacatc |
8102480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 126 - 348
Target Start/End: Complemental strand, 40147681 - 40147459
Alignment:
| Q |
126 |
gtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagtccatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaag |
225 |
Q |
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||||||||| |||||||||| |||||| ||| ||||| || |||| |||||||| || | ||||||||||||||||||||||||||||||||||| |
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| T |
40147681 |
gtaccaaactgattttgcaaaccttaaactcacactaattagacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaag |
40147582 |
T |
|
| Q |
226 |
acatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttccactgcgaactgccactggttttccccat |
325 |
Q |
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||| ||||||| |||||| |||||||||||| ||||||||||||||| || || ||||||| |||||||||||||||||||||||| |||| ||||||| |
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| T |
40147581 |
acacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccactgcgaactgccacaggttctccccat |
40147482 |
T |
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| Q |
326 |
ccaaaattattgccataaacatc |
348 |
Q |
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||||||| ||| ||||||||||| |
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| T |
40147481 |
ccaaaatcattaccataaacatc |
40147459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 176 - 348
Target Start/End: Complemental strand, 7656403 - 7656231
Alignment:
| Q |
176 |
tccatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaa |
275 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||| ||||||||||||||||||| || || |
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| T |
7656403 |
tccatgaactcaggatcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaaggcacaaa |
7656304 |
T |
|
| Q |
276 |
acagtccactttgtttatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatc |
348 |
Q |
| |
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|| |||| || |||||||||||| ||||||||||| || |||||||||||||||| ||| ||||||||||| |
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| T |
7656303 |
ccattccatttgttttatttccactacgaactgccacaggctttccccatccaaaatcattaccataaacatc |
7656231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 195 - 348
Target Start/End: Original strand, 7606108 - 7606261
Alignment:
| Q |
195 |
ttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatt |
294 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||| || ||||| |
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| T |
7606108 |
ttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttattttata |
7606207 |
T |
|
| Q |
295 |
tccactgcgaactgccactggttttccccatccaaaattattgccataaacatc |
348 |
Q |
| |
|
|||||| |||||||| | |||||||||||||| |||| ||| ||||||||||| |
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|
| T |
7606208 |
tccactacgaactgctataggttttccccatccgaaatcattaccataaacatc |
7606261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 191 - 348
Target Start/End: Original strand, 7636932 - 7637089
Alignment:
| Q |
191 |
tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt |
290 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||||||||||||||| |||||||| | || |||||| || || |
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| T |
7636932 |
tcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctatactaccttcttctattccggcaaataccgtaataagtccatttattt |
7637031 |
T |
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| Q |
291 |
tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatc |
348 |
Q |
| |
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||| |||||| |||||||||| || |||||||||||||||| ||| ||||||||||| |
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| T |
7637032 |
tatatccactacgaactgccagaggctttccccatccaaaatcattaccataaacatc |
7637089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 348
Target Start/End: Original strand, 7615118 - 7615275
Alignment:
| Q |
191 |
tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt |
290 |
Q |
| |
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||||||||||||||||||||||||| || | |||||| |||||||| || |||||||||||||||||||||||||| || | || |||||| || || |
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| T |
7615118 |
tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgtaataagtccatttcctt |
7615217 |
T |
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| Q |
291 |
tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatc |
348 |
Q |
| |
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||| |||||| ||||||||||| || |||||||| ||||||| ||| ||||||||||| |
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| T |
7615218 |
tatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatc |
7615275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 7628556 - 7628636
Alignment:
| Q |
191 |
tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaataca |
271 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| | ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7628556 |
tcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaaataca |
7628636 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 191 - 348
Target Start/End: Complemental strand, 8936343 - 8936186
Alignment:
| Q |
191 |
tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt |
290 |
Q |
| |
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||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||| |||||||| | || |||||| || || |
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| T |
8936343 |
tcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttctattccggcaaatactgtaataagtccatttgctt |
8936244 |
T |
|
| Q |
291 |
tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatc |
348 |
Q |
| |
|
||| ||||| ||| |||| || || |||||||||||||||| ||| ||||||||||| |
|
|
| T |
8936243 |
tatatccaccacgacctgctacaggctttccccatccaaaatcattaccataaacatc |
8936186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 195 - 348
Target Start/End: Complemental strand, 8941983 - 8941831
Alignment:
| Q |
195 |
ttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatt |
294 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||| || ||||| |
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| T |
8941983 |
ttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttattttata |
8941884 |
T |
|
| Q |
295 |
tccactgcgaactgccactggttttccccatccaaaattattgccataaacatc |
348 |
Q |
| |
|
|||||| || ||||| | |||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
8941883 |
tccactacg-actgctataggttttccccatccgaaatcattaccataaacatc |
8941831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 191 - 326
Target Start/End: Complemental strand, 8913840 - 8913705
Alignment:
| Q |
191 |
tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt |
290 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||| ||||||||||| ||| |||||||||||||||| ||||||| | || |||||| || || |
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|
| T |
8913840 |
tcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctataataccttcttctattccgacaaatactgtaataagtccatttattt |
8913741 |
T |
|
| Q |
291 |
tatttccactgcgaactgccactggttttccccatc |
326 |
Q |
| |
|
||| |||||| ||||||||||| || |||||||||| |
|
|
| T |
8913740 |
tatatccactacgaactgccacaggctttccccatc |
8913705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 344
Target Start/End: Original strand, 6500375 - 6500520
Alignment:
| Q |
199 |
cattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttcca |
298 |
Q |
| |
|
|||||| |||||| |||||| ||||||||| ||||||||||| |||||||||| |||| |||||||||||||| || || ||| | ||||||| || |
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|
| T |
6500375 |
cattgcttccaaagtcttgtaaggaagacaaacttgaaggtctatactaccttattcttttccagcaaatacactaaccataccatctattttatttaca |
6500474 |
T |
|
| Q |
299 |
ctgcgaactgccactggttttccccatccaaaattattgccataaa |
344 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||| ||| ||||||| |
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|
| T |
6500475 |
ctgcgaaatgccacgggtttcccccatccaaaatcattaccataaa |
6500520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 11968792 - 11968861
Alignment:
| Q |
188 |
ggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttcta |
257 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||||| |||| || ||| |||||||||||||||| |
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|
| T |
11968792 |
ggatcatttttcatggcctccaaaatcttgtaaggaagacacacttcaaagtctatactaccttcttcta |
11968861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 15196416 - 15196335
Alignment:
| Q |
186 |
caggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaa |
267 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| |||||||| |||| || ||||||||| ||||||||| | |||||||| |
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|
| T |
15196416 |
cagggtcatttcccatgacctccaaaatcttgtatggaagacacacttcaaagtccatacttccttcttctttaccagcaaa |
15196335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 4319 - 4390
Alignment:
| Q |
186 |
caggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttcta |
257 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
4319 |
caggatcatttctaattgcctccaaaatttcacaaggaagacatacttcaaggtccatgctaccatcttcta |
4390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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